Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0624
         (465 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    27   1.1  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    27   1.9  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    25   7.5  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    24   9.9  
SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces...    24   9.9  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    24   9.9  

>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 307 DIRKSHILEAHVRAQIIRKKITREGEVLPFYQQELKV 417
           DIRKS I   +  A +  K  T++ +V P  Q+E KV
Sbjct: 490 DIRKSKIRSFYETATVKAKAPTKKSKVKPSKQEESKV 526


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = +1

Query: 319 SHILEAHVRAQIIRKKITREGEVLPFYQQELKVGADGEEDRLMFIW 456
           SH+  +++  Q+I+ K+       P++++  + G D   D L   W
Sbjct: 466 SHLFPSNMPLQLIQDKLRDLAAKHPYFEEVKRYGTDANGDPLWSEW 511


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 162 RSFHSSFHGGFNIREA 209
           +SFH+  + GFNI EA
Sbjct: 553 KSFHAGINHGFNINEA 568


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 146  AYKVLSEFSFKLSWWV 193
            +YK  SE+S K S+W+
Sbjct: 1782 SYKFFSEYSIKASYWL 1797


>SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -1

Query: 372 CYLFTYDLSTHVCFQNVRLSYIPDAE*ETKFTVPQTDN 259
           CYLF    +  +C   VRL  +   +  +    PQT++
Sbjct: 157 CYLFLLGHAKSICSAAVRLDVLTSFQYVSTLAHPQTES 194


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 192 THHESLNENSDNTLYAHDEYRFGAFF 115
           T HE   ENSD+ L   D+ ++  +F
Sbjct: 85  TLHEESGENSDHPLNTSDDSKWKEYF 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,095,882
Number of Sequences: 5004
Number of extensions: 45362
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)