BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= an--0624 (465 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 27 1.1 SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 27 1.9 SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce... 25 7.5 SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 24 9.9 SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces... 24 9.9 SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch... 24 9.9 >SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component |Schizosaccharomyces pombe|chr 3|||Manual Length = 809 Score = 27.5 bits (58), Expect = 1.1 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = +1 Query: 307 DIRKSHILEAHVRAQIIRKKITREGEVLPFYQQELKV 417 DIRKS I + A + K T++ +V P Q+E KV Sbjct: 490 DIRKSKIRSFYETATVKAKAPTKKSKVKPSKQEESKV 526 >SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr 1|||Manual Length = 566 Score = 26.6 bits (56), Expect = 1.9 Identities = 11/46 (23%), Positives = 23/46 (50%) Frame = +1 Query: 319 SHILEAHVRAQIIRKKITREGEVLPFYQQELKVGADGEEDRLMFIW 456 SH+ +++ Q+I+ K+ P++++ + G D D L W Sbjct: 466 SHLFPSNMPLQLIQDKLRDLAAKHPYFEEVKRYGTDANGDPLWSEW 511 >SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 715 Score = 24.6 bits (51), Expect = 7.5 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = +3 Query: 162 RSFHSSFHGGFNIREA 209 +SFH+ + GFNI EA Sbjct: 553 KSFHAGINHGFNINEA 568 >SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces pombe|chr 1|||Manual Length = 4924 Score = 24.2 bits (50), Expect = 9.9 Identities = 8/16 (50%), Positives = 12/16 (75%) Frame = +2 Query: 146 AYKVLSEFSFKLSWWV 193 +YK SE+S K S+W+ Sbjct: 1782 SYKFFSEYSIKASYWL 1797 >SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces pombe|chr 1|||Manual Length = 235 Score = 24.2 bits (50), Expect = 9.9 Identities = 11/38 (28%), Positives = 18/38 (47%) Frame = -1 Query: 372 CYLFTYDLSTHVCFQNVRLSYIPDAE*ETKFTVPQTDN 259 CYLF + +C VRL + + + PQT++ Sbjct: 157 CYLFLLGHAKSICSAAVRLDVLTSFQYVSTLAHPQTES 194 >SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 619 Score = 24.2 bits (50), Expect = 9.9 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = -1 Query: 192 THHESLNENSDNTLYAHDEYRFGAFF 115 T HE ENSD+ L D+ ++ +F Sbjct: 85 TLHEESGENSDHPLNTSDDSKWKEYF 110 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,095,882 Number of Sequences: 5004 Number of extensions: 45362 Number of successful extensions: 94 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 90 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 94 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 176367270 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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