BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= an--0624 (465 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_9469| Best HMM Match : IRK (HMM E-Value=0) 175 1e-44 SB_58706| Best HMM Match : IRK (HMM E-Value=0) 130 6e-31 SB_7412| Best HMM Match : IRK (HMM E-Value=2.2e-20) 45 4e-05 SB_53498| Best HMM Match : Ion_trans (HMM E-Value=8.9e-32) 31 0.62 SB_25129| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-24) 29 1.9 SB_53410| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9 SB_41907| Best HMM Match : Reprolysin (HMM E-Value=9.2e-05) 28 3.3 SB_2218| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.3 SB_25711| Best HMM Match : Oxidored_q1_N (HMM E-Value=3) 28 3.3 SB_39137| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.8 SB_34706| Best HMM Match : Ion_trans_2 (HMM E-Value=2.1e-16) 27 5.8 SB_14984| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-06) 27 5.8 SB_50564| Best HMM Match : Allexi_40kDa (HMM E-Value=4.3) 27 7.7 SB_32476| Best HMM Match : Ion_trans (HMM E-Value=1.7e-36) 27 7.7 >SB_9469| Best HMM Match : IRK (HMM E-Value=0) Length = 520 Score = 175 bits (427), Expect = 1e-44 Identities = 79/134 (58%), Positives = 102/134 (76%) Frame = +1 Query: 25 CLNNVNSFTGCFLFSVETQHTIGYGSRTTNEECPEAIFVMCIQSIVGVFIQAFMVGLIFA 204 C++NV SF FLFS+ETQ TIGYG R + ECPEAI ++ IQS+ G I A ++GLIFA Sbjct: 166 CVHNVESFVTAFLFSLETQTTIGYGGRQISGECPEAIILLNIQSLSGFLINALIMGLIFA 225 Query: 205 KLARAKKRNTTLLFSRNAVICLRDGEFCLLFRVGDIRKSHILEAHVRAQIIRKKITREGE 384 KL+R + R T+LFS+ A++C+RDG+ CL FRVGDIRKS IL H+R Q+ R + T+EG+ Sbjct: 226 KLSRPRNRAETILFSKKALVCVRDGKMCLTFRVGDIRKSQILHCHIRVQLFRTRKTKEGQ 285 Query: 385 VLPFYQQELKVGAD 426 VLPFYQQ+LK G D Sbjct: 286 VLPFYQQDLKTGID 299 >SB_58706| Best HMM Match : IRK (HMM E-Value=0) Length = 385 Score = 130 bits (314), Expect = 6e-31 Identities = 68/152 (44%), Positives = 94/152 (61%), Gaps = 5/152 (3%) Frame = +1 Query: 25 CLNNVNSFTGCFLFSVETQHTIGYGSRTTNEECPEAIFVMCIQSIVGVFIQAFMVGLIFA 204 C++NV+S+ FLFSVETQ TIGYG R ECPE + + +QS+ G+ + A ++GLIFA Sbjct: 122 CVDNVDSWISAFLFSVETQTTIGYGGRQVTPECPEGVVCLLVQSLSGLMLSASLLGLIFA 181 Query: 205 KLARAKKRNTTLLFSRNAVICLRDGEFCLLFRVGDIRKSHILEAHVRAQIIRKKITREGE 384 KL+R + R T+ FS+ AV+ +DG+ CL+FRVGDIRKS +LE V+ I + Sbjct: 182 KLSRPRPRAHTIRFSKRAVVSKKDGKLCLIFRVGDIRKSQLLEVTVKLHCFH-YIAGDNG 240 Query: 385 VLPFYQQELKVGADGE-----EDRLMFIWPMT 465 L F Q EL + E E R F+ P+T Sbjct: 241 SLFFNQSELPIAFSPECEPEYEVRPFFLTPLT 272 >SB_7412| Best HMM Match : IRK (HMM E-Value=2.2e-20) Length = 610 Score = 44.8 bits (101), Expect = 4e-05 Identities = 23/57 (40%), Positives = 38/57 (66%), Gaps = 4/57 (7%) Frame = +1 Query: 301 VGDIR-KSHILEAHVRAQIIRKKITREGEVLPFYQQELKVGAD---GEEDRLMFIWP 459 VGDIR KS ++E+H+RA ++R+ T+EG+ + F+QQ L + D EE+++ P Sbjct: 388 VGDIRTKSQLIESHMRAVVVRRHCTKEGKEIGFFQQGLPLRHDLICEEEEKINLFIP 444 >SB_53498| Best HMM Match : Ion_trans (HMM E-Value=8.9e-32) Length = 294 Score = 30.7 bits (66), Expect = 0.62 Identities = 19/63 (30%), Positives = 32/63 (50%) Frame = +1 Query: 40 NSFTGCFLFSVETQHTIGYGSRTTNEECPEAIFVMCIQSIVGVFIQAFMVGLIFAKLARA 219 +S F +++ T T+GYG T + I MC +++GV + A V +I KL+ Sbjct: 172 SSIPAAFWYTLVTMTTLGYGDITPVTFVGKIIGSMC--ALIGVLLLALPVPIIEEKLSAN 229 Query: 220 KKR 228 K+ Sbjct: 230 TKK 232 >SB_25129| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-24) Length = 540 Score = 29.1 bits (62), Expect = 1.9 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Frame = -1 Query: 432 FAISSHLQLLLVKGQNFPFPCYLFTYD-LSTHVCFQNVRLSYI 307 F + L LL+ + PF Y+ +YD LS +C++++ +YI Sbjct: 57 FILGLSLSDLLIGSFSLPFWTYIVSYDFLSVGICYKSLYQTYI 99 >SB_53410| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 216 Score = 29.1 bits (62), Expect = 1.9 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 5/41 (12%) Frame = -2 Query: 311 ISPTRNRRQNSPSLR-----QITAFLENRSVVLRFLALASF 204 I+PTRNR SPS R I AFL+ RS +R + +SF Sbjct: 62 INPTRNRLYYSPSPRGFGQWWIAAFLQGRSQSVRIGSASSF 102 >SB_41907| Best HMM Match : Reprolysin (HMM E-Value=9.2e-05) Length = 656 Score = 28.3 bits (60), Expect = 3.3 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%) Frame = +1 Query: 37 VNSFTG---CFLFSVETQHTIGYGSRTTNEECPEAIFVM 144 VNS+ G L + E HT+G EECP+ F+M Sbjct: 331 VNSYVGLGTALLITHEIGHTLGVRHDGGREECPDESFLM 369 >SB_2218| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 100 Score = 28.3 bits (60), Expect = 3.3 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%) Frame = +3 Query: 216 GQKT*HDAPVFEKRCYLSE-GR*ILSPIPRRGYKKVAHSGSTRAC 347 G+K H + + C+ S GR S + G + HSGST AC Sbjct: 49 GEKRLHRLFLGDTECFASRLGRDSSSSLLHLGLHRFVHSGSTNAC 93 >SB_25711| Best HMM Match : Oxidored_q1_N (HMM E-Value=3) Length = 166 Score = 28.3 bits (60), Expect = 3.3 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%) Frame = +1 Query: 37 VNSFTG---CFLFSVETQHTIGYGSRTTNEECPEAIFVM 144 VNS+ G L + E HT+G EECP+ F+M Sbjct: 17 VNSYVGLGTALLITHEIGHTLGVRHDGGREECPDESFLM 55 >SB_39137| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 333 Score = 27.5 bits (58), Expect = 5.8 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = +1 Query: 346 AQIIRKKITREGEVLPFYQQELKVGADGEED 438 +++ RK T + +VLPFY L G D EED Sbjct: 290 SEMCRKLETEQEKVLPFYASSL--GVDEEED 318 >SB_34706| Best HMM Match : Ion_trans_2 (HMM E-Value=2.1e-16) Length = 514 Score = 27.5 bits (58), Expect = 5.8 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Frame = +1 Query: 58 FLFSVETQHTIGYGSRTTNEECPEAIF--VMCIQSIV-GVFIQAFMVGLIFAKLA 213 F +++ T T+GYG R+ P++ F V CI I+ GV I + L+ A L+ Sbjct: 240 FWWALVTMTTVGYGDRS-----PKSAFGRVFCIVWIITGVIIVSIFTALVTASLS 289 >SB_14984| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-06) Length = 269 Score = 27.5 bits (58), Expect = 5.8 Identities = 10/22 (45%), Positives = 12/22 (54%) Frame = +3 Query: 120 MPRSDIRHVHTKYCRSFHSSFH 185 +P S HVH +CR FH H Sbjct: 246 LPISVFLHVHVSHCRQFHRHDH 267 >SB_50564| Best HMM Match : Allexi_40kDa (HMM E-Value=4.3) Length = 290 Score = 27.1 bits (57), Expect = 7.7 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = -2 Query: 188 TMKA*MKTPTILCMHMTNIASGHSSF 111 T+K+ ++ PT +HMT+ S HSS+ Sbjct: 252 TIKSYLRHPTHCTVHMTHNTSSHSSY 277 >SB_32476| Best HMM Match : Ion_trans (HMM E-Value=1.7e-36) Length = 454 Score = 27.1 bits (57), Expect = 7.7 Identities = 18/67 (26%), Positives = 29/67 (43%) Frame = +1 Query: 43 SFTGCFLFSVETQHTIGYGSRTTNEECPEAIFVMCIQSIVGVFIQAFMVGLIFAKLARAK 222 S G F +S+ T T+GYG + + V I S+ GV + A V L + + Sbjct: 319 SIPGAFWWSISTVTTVGYGDQYPLTASGK--IVGSILSVFGVLVVALPVFLFVSNFKKVL 376 Query: 223 KRNTTLL 243 T++ Sbjct: 377 STKCTVV 383 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,860,324 Number of Sequences: 59808 Number of extensions: 338105 Number of successful extensions: 794 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 760 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 794 length of database: 16,821,457 effective HSP length: 76 effective length of database: 12,276,049 effective search space used: 957531822 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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