Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0624
         (465 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g16660.1 68415.m01912 nodulin family protein similar to nodul...    33   0.13 
At1g19340.1 68414.m02404 methyltransferase MT-A70 family protein...    29   1.2  
At3g13590.1 68416.m01711 DC1 domain-containing protein contains ...    29   1.5  
At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam ...    27   4.7  
At1g32375.1 68414.m03994 F-box family protein contains F-box dom...    27   4.7  
At1g10385.1 68414.m01170 hypothetical protein                          27   6.2  
At5g37500.1 68418.m04516 guard cell outward rectifying K+ channe...    27   8.3  
At1g20180.1 68414.m02522 hypothetical protein similar to At14a (...    27   8.3  

>At2g16660.1 68415.m01912 nodulin family protein similar to
           nodulin-like protein [Arabidopsis thaliana] GI:3329368,
           nodule-specific protein Nlj70 [Lotus japonicus]
           GI:3329366
          Length = 546

 Score = 32.7 bits (71), Expect = 0.13
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +1

Query: 58  FLFSVETQHTIGYGSRTTNEECPEAIF-VMCIQSIVGV---FIQAFMVGLIFAKLARAKK 225
           FL+  E   T G G+      C   IF VM + S++GV    + A+    I+AK+  +KK
Sbjct: 478 FLYDAEATPTPGGGNTCVGAHCYRLIFIVMALASVIGVGLDLVLAYRTKEIYAKIHASKK 537


>At1g19340.1 68414.m02404 methyltransferase MT-A70 family protein
           contains Pfam profile PF05063: MT-A70
           (S-adenosylmethionine-binding subunit of human mRNA:m6A
           methyl-transferase (MTase))
          Length = 414

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 184 MVGLIFAKLARAKKRNTTLLFSRNAVICLRDGEFCLLFRVGDIRKSH 324
           ++G  F +LA ++KR+   L  +N +I    G+F     +GDI   H
Sbjct: 328 LLGYHFTELAGSEKRSDFKLLDKNQIIMSIPGDFSRKPPIGDILLKH 374


>At3g13590.1 68416.m01711 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 513

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +1

Query: 19  VPCLNNVNSFTGCFLFSVETQHTIGYGSRTTNEECPEAIFVMC 147
           V  +NN N F  C   SV  QH+ G+  +   E+C   I V C
Sbjct: 294 VDAMNNENGFFTC---SVCNQHSCGFMYKCCQEDCEFKIDVKC 333


>At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam
           profile: PF03399 SAC3/GANP family
          Length = 1720

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +1

Query: 163 GVFIQAFMVGLIFAKLARAKKRNTTLLFSRNAVICLRDGEFCLLFRVGDIRKSHILEA 336
           G  ++   + L  A +    ++ + +LF+RN     R G F   FR+   RK+  L+A
Sbjct: 670 GYKVEPSELSLDLANMTPEIRQTSEVLFARNVARACRTGNFIAFFRLA--RKASYLQA 725


>At1g32375.1 68414.m03994 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 422

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 16  PVPCLNNVNSFTGCFLFSVETQHTIGYGSRTTNEECPEAIFVM 144
           P PC N  ++   C L S+ET   + Y    T EE   A F++
Sbjct: 339 PRPCWNEPSAVPECLLTSLETLEWVKY--EGTEEEKEVAAFIL 379


>At1g10385.1 68414.m01170 hypothetical protein
          Length = 754

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 343 ARVLPECATFLYPRRGIGDKIHRPSDR 263
           +R+LP+  +   PRRG  D+ +RP  R
Sbjct: 513 SRILPQGTSQSTPRRGSSDRQNRPEQR 539


>At5g37500.1 68418.m04516 guard cell outward rectifying K+ channel
           (GORK) identical to guard cell outward rectifying K+
           channel [Arabidopsis thaliana] gi|11414742|emb|CAC17380;
           member of the 1 pore, 6 transmembrane (1P/6TM) Shaker K+
           channel family, PMID:11500563
          Length = 820

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +1

Query: 46  FTGCFLFSVETQHTIGYGSRTTNEECPEAIFVMCIQSIVGVFIQAFMVGLIFAKLAR 216
           +T    F++ T  T+GYG         E IFVM   S   + + A+++G I A + +
Sbjct: 258 YTTALYFAIVTMATVGYGD-IHAVNLREMIFVMIYVSF-DMVLGAYLIGNITALIVK 312


>At1g20180.1 68414.m02522 hypothetical protein similar to At14a
           (GI:11994571 and GI:11994573) [Arabidopsis thaliana]
          Length = 391

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 91  GYGSRTTNEECPEAIFVMCIQSIVGVFIQAFMVGLIFAKLARAKK 225
           GY    T+      + ++ + SI+GVF    ++GL    L R KK
Sbjct: 231 GYSLVITHSAIVITLLIIALHSILGVFAAPALLGLCSFCLLRKKK 275


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,086,339
Number of Sequences: 28952
Number of extensions: 244077
Number of successful extensions: 615
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)