Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0622
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.10c |oca8||cytochrome b5 |Schizosaccharomyces pombe|ch...    85   9e-18
SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr 2|...    71   2e-13
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces...    65   1e-11
SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces p...    53   4e-08
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    29   0.48 
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    27   1.9  
SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|c...    26   4.5  
SPCC569.06 |||S. pombe specific multicopy membrane protein famil...    26   4.5  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   7.8  
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   7.8  
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch...    25   7.8  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    25   7.8  

>SPCC16A11.10c |oca8||cytochrome b5 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 129

 Score = 85.0 bits (201), Expect = 9e-18
 Identities = 37/71 (52%), Positives = 52/71 (73%)
 Frame = +1

Query: 478 DRTITLAEVAHHDTPDDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGH 657
           ++TIT+ EV  H+T DD +IV+ D+VYDIS FLD HPGG +++++ AGRDAS  F   GH
Sbjct: 3   EKTITVEEVLKHNTRDDLYIVVKDKVYDISKFLDAHPGGEEVLVDLAGRDASGPFEDVGH 62

Query: 658 SRMAVKALDRF 690
           S  A + L++F
Sbjct: 63  SEDAQELLEKF 73


>SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 70.9 bits (166), Expect = 2e-13
 Identities = 30/62 (48%), Positives = 44/62 (70%)
 Frame = +1

Query: 499 EVAHHDTPDDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMAVKA 678
           E+  H+   D ++VI  +VYD+S F D+HPGG DIML+YAG+DA+ A++  GHS  A + 
Sbjct: 10  EIVEHNNSKDMYMVINGKVYDVSNFADDHPGGLDIMLDYAGQDATKAYQDIGHSIAADEL 69

Query: 679 LD 684
           L+
Sbjct: 70  LE 71


>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 147

 Score = 64.9 bits (151), Expect = 1e-11
 Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
 Frame = +1

Query: 313 HTTNEVNLSAPTPNQXXXXXXXXXXXXXXRFVNPWSVNTEQKQWTEVVPG----SPEAKD 480
           H T ++ +S  + N               ++V P      Q  W+++V      S   K 
Sbjct: 15  HQTPQIRISPASSNVEHSEKQPRRDFRVKKYVAP---GFSQLNWSKLVASGQNLSGVEKP 71

Query: 481 RTITLAEVAHHDTPDDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAF 642
             +T  E+A H T +DCWI I  +VY++S +L  HP G   +L+YAGRDA+  F
Sbjct: 72  IPVTKEELAKHKTKEDCWIAIRGKVYNVSAYLPYHPAGQKRILDYAGRDATVIF 125


>SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 145

 Score = 52.8 bits (121), Expect = 4e-08
 Identities = 20/53 (37%), Positives = 36/53 (67%)
 Frame = +1

Query: 484 TITLAEVAHHDTPDDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAF 642
           ++T  E+A H +PDDCW+ I  +VY+++ +L  HP G   +L+++G DA+  +
Sbjct: 71  SVTAEELAKHCSPDDCWMAIRGKVYNVTAYLPYHPVGPKKILKHSGVDATKPY 123


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +1

Query: 535 IVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAF 642
           ++I   V+D++ F  EHPGG  ++    G+DA+ AF
Sbjct: 376 VLINGVVHDMTGF--EHPGGQGLLRSAFGKDATAAF 409


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 670 QPCESAQNS*KPCLRLGLRTPTLYRHRQDARL 575
           QPC    +S K C  L L TP L+ H Q+  +
Sbjct: 620 QPCRWCLDSGKECGELLLGTPLLHSHLQEMHI 651


>SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 146

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -2

Query: 335 KFTSLVVCTV-VIFAFNFKLIFELLRPQ*FVELVRFLTRSQHN*SIADLW 189
           +++ ++ C V ++ +  +++ F  LR    +E    +   QHN ++ADLW
Sbjct: 87  RYSLILTCLVAILLSVLWRIQFAALRMHDLIEEELKMFVLQHNCTLADLW 136


>SPCC569.06 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -2

Query: 395 AAIVSAIRSKSAS*FGVGADKFTSLVVCTVVIFAFNFKLIFELLR 261
           A +    R K AS F    + F +L +  +++FAFN  +IF+ L+
Sbjct: 373 AVLAFRFRLKKASQFDTRWNLF-ALTLAIIILFAFNDLVIFDKLQ 416


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +1

Query: 418 SVNTEQKQWTEVVPGSPEAKDRTITLAEVAHHDTPDDCWIVIY 546
           S+NT   Q       S   +  +I L+  AH    D+ W VIY
Sbjct: 530 SINTSSHQHYGSTLNSTPHRRNSIALSNRAHVKLIDNIWTVIY 572


>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +1

Query: 454 VPGSPEAKDRTITLAEVAHHDTPDDCWIVIYDRVYDISTFLDEHPGGGDI 603
           +PG+P  K R I+L + A    PD    +     Y+IS     H  G ++
Sbjct: 29  IPGAPACKRREISLYKRATDTFPDLSSAIASTSYYNISEGTYCHVSGSNL 78


>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 198

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/65 (20%), Positives = 29/65 (44%)
 Frame = +1

Query: 430 EQKQWTEVVPGSPEAKDRTITLAEVAHHDTPDDCWIVIYDRVYDISTFLDEHPGGGDIML 609
           +Q++ T+      +A   ++     +H       + ++  +V+D+   + E    GD +L
Sbjct: 134 DQEEITKQARRYAKAMKASLVFCSTSHSINVQKIFKIVLAKVFDLKCTIPEIKNVGDPIL 193

Query: 610 EYAGR 624
           EY  R
Sbjct: 194 EYIDR 198


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -2

Query: 131 ISGNDCHTNCHYATVVRI-LAYSSQCL 54
           +S  DC T+CH+ + + I L +S  CL
Sbjct: 870 LSPMDCFTSCHFDSDMSIDLKFSMNCL 896


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,840,404
Number of Sequences: 5004
Number of extensions: 56732
Number of successful extensions: 157
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)