Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0622
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3835| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23)                 75   5e-14
SB_34578| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23)                75   5e-14
SB_58806| Best HMM Match : Cyt-b5 (HMM E-Value=2.2e-20)                57   1e-08
SB_23882| Best HMM Match : Cyt-b5 (HMM E-Value=9.2e-19)                52   3e-07
SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)                   49   4e-06
SB_31956| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   1e-05
SB_49983| Best HMM Match : Cyt-b5 (HMM E-Value=8.4e-12)                45   7e-05
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)              35   0.054
SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6)                    34   0.094
SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9)                     30   2.0  
SB_17517| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.072)             29   3.6  

>SB_3835| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23)
          Length = 109

 Score = 74.9 bits (176), Expect = 5e-14
 Identities = 30/67 (44%), Positives = 47/67 (70%)
 Frame = +1

Query: 490 TLAEVAHHDTPDDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMA 669
           T  EV +H+    CW+VI+++V+D++ FLDEHPGG +++LE AG DAS +F   GHS  A
Sbjct: 11  TFDEVKNHNKAGGCWLVIHNKVFDVTKFLDEHPGGEEVLLEQAGGDASESFEDVGHSSDA 70

Query: 670 VKALDRF 690
            + ++ +
Sbjct: 71  RELMNEY 77


>SB_34578| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23)
          Length = 172

 Score = 74.9 bits (176), Expect = 5e-14
 Identities = 30/67 (44%), Positives = 47/67 (70%)
 Frame = +1

Query: 490 TLAEVAHHDTPDDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHSRMA 669
           T  EV +H+    CW+VI+++V+D++ FLDEHPGG +++LE AG DAS +F   GHS  A
Sbjct: 11  TFDEVKNHNKAGGCWLVIHNKVFDVTKFLDEHPGGEEVLLEQAGGDASESFEDVGHSSDA 70

Query: 670 VKALDRF 690
            + ++ +
Sbjct: 71  RELMNEY 77


>SB_58806| Best HMM Match : Cyt-b5 (HMM E-Value=2.2e-20)
          Length = 142

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 26/70 (37%), Positives = 40/70 (57%)
 Frame = +1

Query: 481 RTITLAEVAHHDTPDDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHS 660
           +  TL EV  H +  DCW+V+ D VYD+S ++  HPGG   +L  AGR+ +  F++   +
Sbjct: 11  KVYTLDEVKEHCSKGDCWVVVEDSVYDLSKWIGHHPGGELPILYMAGRECTDVFKAFHPA 70

Query: 661 RMAVKALDRF 690
            +  K L  F
Sbjct: 71  WVFTKKLPAF 80


>SB_23882| Best HMM Match : Cyt-b5 (HMM E-Value=9.2e-19)
          Length = 167

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 6/79 (7%)
 Frame = +1

Query: 472 AKDRTITLA--EVAHHDTPDDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFR 645
           +K+R +  +  E+  H +  D W++   +VYDIS F + HPGG D++L  +G+D  T+  
Sbjct: 3   SKEREVFFSREEIGRHKSDGDLWVIHSGKVYDISKFSERHPGGKDVLLLNSGQDV-TSIM 61

Query: 646 SSG----HSRMAVKALDRF 690
           S+G    HS++A   L ++
Sbjct: 62  SNGEIHKHSQIAYGWLKKY 80


>SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)
          Length = 1790

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 19/54 (35%), Positives = 33/54 (61%)
 Frame = +1

Query: 499  EVAHHDTPDDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSSGHS 660
            ++ +H+     W+VI+ +VYD+  F +E P G  ++ +YA  DA+ AF  + HS
Sbjct: 1235 DLENHNKEGGMWVVIHGKVYDLKEFKEEAPCGESLLQKYAACDATKAFEEANHS 1288


>SB_31956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 19/56 (33%), Positives = 35/56 (62%)
 Frame = +1

Query: 481 RTITLAEVAHHDTPDDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRS 648
           +T T  +++  +T  +  + I+ +VYD++ FL  HPGG +++L  AGRD +  F +
Sbjct: 23  KTFTWQQLSRLNTEQNAHLAIHGKVYDVTNFLLRHPGGKELLLIGAGRDVTLVFET 78


>SB_49983| Best HMM Match : Cyt-b5 (HMM E-Value=8.4e-12)
          Length = 303

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = +1

Query: 481 RTITLAEVAHH-DTPDDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAG 621
           RT +L+EVA H D     W    D VYD++ F+++HPGG  +++  AG
Sbjct: 156 RTFSLSEVAKHTDARHGVWTTYEDGVYDLTDFIEQHPGGKKMIMLAAG 203


>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
          Length = 672

 Score = 35.1 bits (77), Expect = 0.054
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +1

Query: 457 PGSPEAKDRTITLAEVA-HHDTPDDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAG 621
           PG      +  +  EV+ H++     W+     VYDI+ F+D HPGG   ++  AG
Sbjct: 194 PGQQLNTAKIYSKEEVSKHNNRKSRIWVTYKGGVYDITDFIDGHPGGTSKIILAAG 249


>SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6)
          Length = 984

 Score = 34.3 bits (75), Expect = 0.094
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = +1

Query: 481 RTITLAEVAHHDTPDDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGRDASTAFRSS 651
           +TI +  +    +   C  +  D  Y   T  +EH  GG I   YAGR A    RSS
Sbjct: 106 KTIDITRIRRQRSMRSCAKLAKDDRYSTRTPAEEHAQGGSIFDAYAGRGACAVVRSS 162


>SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9)
          Length = 1058

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +1

Query: 475 KDRTITLAEVAHHDTPDDCWIVIYDRVYDISTFLDEHPGGGDIMLEYAGR 624
           KD+ + + E +H  T D      YD +Y    F  ++   G++M EY GR
Sbjct: 94  KDQFVGIME-SHARTVDITTHQFYDLLYAFHMFRGDYRKAGNVMYEYGGR 142


>SB_17517| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.072)
          Length = 2374

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +2

Query: 80   YEQLWHSDNWCDSHSPRFEHQQR*HETFRSSALIKRTTSLQ*INCAETALR 232
            + QL  S+N+C+ H    + +Q   E  + S   K  +SL+   CA T++R
Sbjct: 1636 FTQLITSNNYCNYHRLTNQVEQPVQERVKDSRKPKTVSSLEASGCAMTSVR 1686


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,891,776
Number of Sequences: 59808
Number of extensions: 441457
Number of successful extensions: 1161
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)