Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0621
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0496 - 24325587-24326143,24326658-24327495,24327612-24327764     31   0.96 
01_05_0553 + 23185473-23186188,23187096-23187101,23187230-231873...    30   2.2  
02_01_0129 - 934865-935152,935241-935490,935965-936105,937175-93...    29   5.1  
12_02_1195 + 26906814-26907121,26907771-26907992,26908913-269091...    28   9.0  

>11_06_0496 - 24325587-24326143,24326658-24327495,24327612-24327764
          Length = 515

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 19/68 (27%), Positives = 27/68 (39%)
 Frame = -1

Query: 263 YLKLVFCFKLISSFELKLLEIRVLSCDFGFTSHWLHLQATSKNYQIKQCF*GNRKSVH*Q 84
           +  L  C  + + F+  +   R + CD    SHW H     +  QIK          H  
Sbjct: 189 FCNLCMCV-VCNGFDFDVNTCRWIGCDG--CSHWTHAGCAIREEQIKTVITVEDGVAHYV 245

Query: 83  TVVFCRRC 60
           TV FC+ C
Sbjct: 246 TVFFCKAC 253


>01_05_0553 + 23185473-23186188,23187096-23187101,23187230-23187374,
            23187887-23188159,23188275-23188338,23188479-23188744,
            23188951-23189045,23189544-23189718,23190669-23191063,
            23191830-23191953,23192864-23192959,23193049-23193120,
            23194687-23194824,23195369-23195549,23195602-23195963,
            23196944-23197386,23197461-23197763,23197857-23198081,
            23198260-23198350,23198702-23198779,23198939-23199229,
            23199316-23199513,23199681-23200163,23200488-23200562,
            23201163-23201324,23201400-23201729,23201816-23201916,
            23202477-23202581,23202931-23203162,23203913-23204257,
            23204346-23204447,23206010-23206153,23206463-23206551,
            23206979-23207061,23207172-23207287,23207824-23207909,
            23208461-23208560,23209270-23209335
          Length = 2451

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 65   FYKKQQFVNVHFFYFLRNIVLFDNSLTSLVSEAND 169
            F  K+QF+N +FFYF+R      N   ++V E +D
Sbjct: 897  FKGKRQFLNGNFFYFIRLSGKLHNVARAIVDEDSD 931


>02_01_0129 -
           934865-935152,935241-935490,935965-936105,937175-937707
          Length = 403

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/20 (55%), Positives = 17/20 (85%), Gaps = 1/20 (5%)
 Frame = +3

Query: 288 VHWCSHGVPDTFV-LLSSKI 344
           +HWC  GVPDT+V +L+++I
Sbjct: 375 MHWCLPGVPDTWVDILAARI 394


>12_02_1195 +
           26906814-26907121,26907771-26907992,26908913-26909153,
           26909512-26909642,26910336-26910474,26910600-26910810,
           26911371-26911759
          Length = 546

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 319 LLFSCQAKYVLYLPVCKILLFCSSCHFVI 405
           ++  C A   L L +C +LLFC S  F+I
Sbjct: 518 IIICCAALVYLALWLCGLLLFCRSVQFLI 546


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,564,317
Number of Sequences: 37544
Number of extensions: 259200
Number of successful extensions: 471
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)