Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0621
         (740 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16320.1 68416.m02061 cell division cycle family protein / CD...    29   2.4  
At2g27520.1 68415.m03329 F-box family protein contains Pfam prof...    29   3.2  
At5g64470.2 68418.m08100 expressed protein similar to unknown pr...    28   5.7  
At1g28570.2 68414.m03518 GDSL-motif lipase, putative similar to ...    28   5.7  
At2g42570.1 68415.m05268 expressed protein                             27   9.9  

>At3g16320.1 68416.m02061 cell division cycle family protein / CDC
           family protein similar to SP|P30260|CC27_HUMAN Protein
           CDC27Hs (Cell division cycle protein 27 homolog) Homo
           sapiens, C-terminus similar to C-term of cell division
           control protein 27 SP:P38042 (Saccharomyces cerevisiae);
           contains Pfam profile PF00515 TPR Domain
          Length = 727

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 194 LSCDFGFTSHWLHLQATSKNY 132
           +S  FG  SHWLHL  +  NY
Sbjct: 305 MSQSFGKDSHWLHLSPSESNY 325


>At2g27520.1 68415.m03329 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 347

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -1

Query: 326 NKSIRNTMGTPMNISSYVAYNYLKLVFCFKLISSFELKLLEIRVLS 189
           N  I    G      SY +Y  L++ +  KL+  FELK    RVLS
Sbjct: 124 NHDIALGYGNNSTKKSYDSYKILRITYGCKLVEIFELKSNSWRVLS 169


>At5g64470.2 68418.m08100 expressed protein similar to unknown
           protein (gb|AAD15463.1)
          Length = 407

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +3

Query: 288 VHWCSHGVPDTFV-LLSSKICT 350
           +HWC  GVPDT+V +L+  I T
Sbjct: 381 MHWCLPGVPDTWVDILAELILT 402


>At1g28570.2 68414.m03518 GDSL-motif lipase, putative similar to
           lipase [Arabidopsis thaliana] GI:1145627; contains
           InterPro Entry IPR001087 Lipolytic enzyme, G-D-S-L
           family
          Length = 317

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -3

Query: 651 FIKCIKFPYLILSTFTYTT*IATPPCNHY 565
           F+K + F +LILSTF  TT  + P C+++
Sbjct: 5   FMKLVSF-FLILSTFCLTTVNSEPQCHNF 32


>At2g42570.1 68415.m05268 expressed protein
          Length = 367

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 291 HWCSHGVPDTFVLLSSKICTLFTS 362
           HWC  G+PDT+ LL     TLF+S
Sbjct: 346 HWCLPGLPDTWNLLF--YSTLFSS 367


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,575,731
Number of Sequences: 28952
Number of extensions: 241869
Number of successful extensions: 496
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)