Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0620
(636 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 194 7e-51
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 62 9e-11
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 48 9e-07
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 33 0.026
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 1.7
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch... 27 2.3
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 26 4.0
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 26 5.2
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz... 26 5.2
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 25 6.9
SPBC23G7.10c |||NADH-dependent flavin oxidoreductase |Schizosacc... 25 9.1
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 194 bits (474), Expect = 7e-51
Identities = 100/137 (72%), Positives = 112/137 (81%), Gaps = 3/137 (2%)
Frame = +3
Query: 234 DVQFED--NLPPILNALEVQ-NRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDS 404
D QFED +LP ILNALEV+ + RLVLEVAQH+GENTVRTIAMDGTEGLVRG V+D+
Sbjct: 66 DCQFEDADSLPSILNALEVKLPDNKRLVLEVAQHVGENTVRTIAMDGTEGLVRGTAVIDT 125
Query: 405 GSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIK 584
GSPI IPVG TLGRI+NVIGEP+DERGPI K + IHA+AP F + S EIL TGIK
Sbjct: 126 GSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHADAPSFEEQSTTPEILETGIK 185
Query: 585 VVDLLAPYAKGGKIGLF 635
VVDLLAPYA+GGKIGLF
Sbjct: 186 VVDLLAPYARGGKIGLF 202
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 61.7 bits (143), Expect = 9e-11
Identities = 33/102 (32%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Frame = +3
Query: 315 VAQHLGENTVRTIAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGP 491
+A +L +TV + G + LVR G+ V + + +PVG LGR+++ +G PID +GP
Sbjct: 90 MALNLEADTVGCVLF-GNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGP 148
Query: 492 IPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKG 617
I T + + +AP + + E + TG+K +D + P +G
Sbjct: 149 IKTTERRRVQLKAPGILPRTSVCEPMQTGLKAIDSMVPIGRG 190
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 48.4 bits (110), Expect = 9e-07
Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Frame = +3
Query: 306 VLEVAQHLGENTVRTIAMDGTEGL-VRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 482
VLEVA H V +GT G+ VR + +G +RIPV + LGR+ N G PID+
Sbjct: 63 VLEVAGHKAIVQV----FEGTSGVDVRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLPIDK 118
Query: 483 RGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKGGKIGLF 635
+ + I+ +E++ TGI +D L A+G KI +F
Sbjct: 119 GPNLLAEDYLDINGSPINPYARIYPEEMIQTGISSIDGLNSIARGQKIPIF 169
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 33.5 bits (73), Expect = 0.026
Identities = 27/108 (25%), Positives = 46/108 (42%)
Frame = -3
Query: 628 PIFPPLA*GASRSTTFIPVTRISCCTDMSTNSGASA*IAAVLSVGMGPRSSIGSPITLMM 449
PI P +++ +P T SC T S +G S+ ++ ++ + P S+ + I +
Sbjct: 206 PIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPP 265
Query: 448 RPRVSAPTGIRIGEPESSTGCPRTKPSVPSMAMVRTVFSPKCWATSST 305
S T P +ST C T S+P T +P TS++
Sbjct: 266 TSTSSTDTN-SSPLPTTSTSC-TTSTSIPPTGNSTTPVTPTVPPTSTS 311
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 27.5 bits (58), Expect = 1.7
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -3
Query: 490 GPRSSIGSPITLMMRPRVSA-PTGIRIGEPESSTGCPRTKPSVPSM 356
G R++ G+P + R+++ PT I PES K S PS+
Sbjct: 154 GKRTAPGNPWAIRSAERLASNPTSIGTSSPESIDNNSNNKKSAPSL 199
>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 27.1 bits (57), Expect = 2.3
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 1/113 (0%)
Frame = +3
Query: 297 PRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPI 476
P + E +H G N+ EG+V+ L++ P+ IPV + N IGE
Sbjct: 10 PAIKNEPPKHYGPNSA------DREGIVKAYKELEAELPVTIPVIIDGKEVETNTIGE-- 61
Query: 477 DERGPIPTDKTAA-IHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKGGKIGL 632
+R P K A H + V+ ++ E + G KV + L P+A I L
Sbjct: 62 -QRCPFEHKKVVARYHRAGAKHVEDAI--EAALRGKKVWESL-PFADRSAIFL 110
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 115 NPFQNVEKSLQSMPLTRGTMLLNLQEKAKVRLLPLSV 225
NPF N ++S+++MP L+NLQE + + P S+
Sbjct: 115 NPFPNGKQSIKAMP-----SLVNLQEDSVISKFPNSL 146
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 366 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 482
T GL G PV +G P+ + +G I + I P+ +
Sbjct: 77 TSGLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQ 115
>SPBC1A4.06c |||mitochondrial matrix protein import
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 25.8 bits (54), Expect = 5.2
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -2
Query: 632 QPNLSSFGIRSEQIDDFYTSYENLLLHRHVDKLWSFSMNSSSLVG 498
+P+ SSF +E + S +LL+ + + KL SFS+ + S+ G
Sbjct: 322 KPDTSSFEKCAELMLTNQISTRSLLISKSIKKLTSFSILTQSIKG 366
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.4 bits (53), Expect = 6.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 430 PTGIRIGEPESSTGCPRTKPSVPSMAMV 347
P G +G PES+ KPS PS + +
Sbjct: 795 PLGHALGNPESNNSSNSFKPSHPSQSFL 822
>SPBC23G7.10c |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 291 RSPRLVLEVAQHLGENTVRTIAMD 362
R+P LVL+ A LGEN + D
Sbjct: 362 RNPSLVLDSANQLGENVAWPVQYD 385
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,670,830
Number of Sequences: 5004
Number of extensions: 54462
Number of successful extensions: 174
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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