BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= an--0619 (617 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 28 1.2 SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos... 27 2.2 SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo... 27 2.9 SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 27 2.9 SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 25 6.6 SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S... 25 6.6 SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc... 25 8.8 >SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizosaccharomyces pombe|chr 3|||Manual Length = 626 Score = 27.9 bits (59), Expect = 1.2 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = +2 Query: 53 NLRKKVENILPRLFDNITDYFEGNDSAV 136 NLR+K IL RL D F N+S V Sbjct: 462 NLRRKKARILKRLMQESNDTFSANESTV 489 >SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 701 Score = 27.1 bits (57), Expect = 2.2 Identities = 9/21 (42%), Positives = 15/21 (71%) Frame = +2 Query: 347 QNFLEYFDISIESVYSKTDFD 409 Q+F+E D+ ++ +SK DFD Sbjct: 650 QHFIELIDLHVQDEFSKEDFD 670 >SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizosaccharomyces pombe|chr 1|||Manual Length = 344 Score = 26.6 bits (56), Expect = 2.9 Identities = 17/63 (26%), Positives = 31/63 (49%) Frame = +2 Query: 14 KSMQALTLNFLNDNLRKKVENILPRLFDNITDYFEGNDSAVCCLCHGDFRPNNIMMKEID 193 K++Q L N D+ ++ N L + N++ V + HGD +P+N+++ E Sbjct: 148 KALQYLHENVAGDSPKQPEVNDLIMFDEPQVPQNTSNNNLVSYI-HGDIKPDNLLLHENS 206 Query: 194 GEI 202 EI Sbjct: 207 REI 209 >SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr 1|||Manual Length = 872 Score = 26.6 bits (56), Expect = 2.9 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%) Frame = +1 Query: 238 LWMSN-NRFLILRIHGNRQRIQKSSFNTPENPILRYNAKFS 357 LWMS NR L HG+ + I +S+ +TP NP+ YN S Sbjct: 537 LWMSVLNRLLWKNEHGSPKDI-RSAASTPANPV--YNRSSS 574 >SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosaccharomyces pombe|chr 2|||Manual Length = 735 Score = 25.4 bits (53), Expect = 6.6 Identities = 13/42 (30%), Positives = 19/42 (45%) Frame = +2 Query: 164 PNNIMMKEIDGEISETIPIDYQLIYYGCPIIDFLYFVFTATD 289 PN ++ DG + D+ L Y C I+D + ATD Sbjct: 166 PNTLLKYMTDGMLLREAMTDHMLSRYSCIILDEAHERTLATD 207 >SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit Sfc6|Schizosaccharomyces pombe|chr 2|||Manual Length = 582 Score = 25.4 bits (53), Expect = 6.6 Identities = 9/39 (23%), Positives = 25/39 (64%) Frame = +2 Query: 371 ISIESVYSKTDFDNDYKKKLDYGLIVTILYCPFMFVDEN 487 I + + +KT+F +++ D+G ++ + +CP + V+++ Sbjct: 249 IQLWKLENKTNFKSEFILYHDWGSVLQLEWCPTISVEDS 287 >SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces pombe|chr 1|||Manual Length = 581 Score = 25.0 bits (52), Expect = 8.8 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%) Frame = +2 Query: 329 LYYDTMQNFLEYFD-ISIESVY-SKTDFDNDYKK 424 +YY T QNF Y D + E+++ S D +N Y K Sbjct: 355 IYYGTEQNFNSYHDPFNREALWLSNFDMENVYYK 388 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,402,421 Number of Sequences: 5004 Number of extensions: 49703 Number of successful extensions: 128 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 127 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 128 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 271646730 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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