Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0619
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    28   1.2  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    27   2.2  
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo...    27   2.9  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    27   2.9  
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    25   6.6  
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    25   6.6  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    25   8.8  

>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 53  NLRKKVENILPRLFDNITDYFEGNDSAV 136
           NLR+K   IL RL     D F  N+S V
Sbjct: 462 NLRRKKARILKRLMQESNDTFSANESTV 489


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 347 QNFLEYFDISIESVYSKTDFD 409
           Q+F+E  D+ ++  +SK DFD
Sbjct: 650 QHFIELIDLHVQDEFSKEDFD 670


>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = +2

Query: 14  KSMQALTLNFLNDNLRKKVENILPRLFDNITDYFEGNDSAVCCLCHGDFRPNNIMMKEID 193
           K++Q L  N   D+ ++   N L    +        N++ V  + HGD +P+N+++ E  
Sbjct: 148 KALQYLHENVAGDSPKQPEVNDLIMFDEPQVPQNTSNNNLVSYI-HGDIKPDNLLLHENS 206

Query: 194 GEI 202
            EI
Sbjct: 207 REI 209


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 238 LWMSN-NRFLILRIHGNRQRIQKSSFNTPENPILRYNAKFS 357
           LWMS  NR L    HG+ + I +S+ +TP NP+  YN   S
Sbjct: 537 LWMSVLNRLLWKNEHGSPKDI-RSAASTPANPV--YNRSSS 574


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 164 PNNIMMKEIDGEISETIPIDYQLIYYGCPIIDFLYFVFTATD 289
           PN ++    DG +      D+ L  Y C I+D  +    ATD
Sbjct: 166 PNTLLKYMTDGMLLREAMTDHMLSRYSCIILDEAHERTLATD 207


>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/39 (23%), Positives = 25/39 (64%)
 Frame = +2

Query: 371 ISIESVYSKTDFDNDYKKKLDYGLIVTILYCPFMFVDEN 487
           I +  + +KT+F +++    D+G ++ + +CP + V+++
Sbjct: 249 IQLWKLENKTNFKSEFILYHDWGSVLQLEWCPTISVEDS 287


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +2

Query: 329 LYYDTMQNFLEYFD-ISIESVY-SKTDFDNDYKK 424
           +YY T QNF  Y D  + E+++ S  D +N Y K
Sbjct: 355 IYYGTEQNFNSYHDPFNREALWLSNFDMENVYYK 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,402,421
Number of Sequences: 5004
Number of extensions: 49703
Number of successful extensions: 128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)