Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0619
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0555 - 34693067-34693196,34693450-34693688,34693956-346940... 30 1.3
10_01_0028 - 359988-359996,360228-360332,360415-360536,360676-36... 29 2.2
12_01_0356 - 2707820-2708395,2708475-2708705,2709071-2709190,270... 29 3.0
03_04_0092 + 17255548-17256046,17257838-17258262 29 3.0
05_06_0207 + 26377836-26378201,26379785-26379906,26380025-263802... 28 5.2
04_03_0201 - 12586324-12587131,12590080-12591512 28 5.2
11_04_0423 - 17498569-17498932,17499217-17499992,17503439-17504617 28 6.8
07_03_1214 + 24931142-24932314,24934177-24934434 28 6.8
08_01_0092 + 673271-673452,673546-673621,674043-674104,674504-67... 27 9.0
>03_06_0555 -
34693067-34693196,34693450-34693688,34693956-34694033,
34694057-34694131,34694667-34694831,34695101-34695151,
34695250-34695300,34695462-34695533,34695736-34695948,
34696064-34696214,34696376-34696490,34696665-34696748,
34696841-34696964,34697064-34697145,34697238-34697299,
34697787-34697840,34697944-34698147
Length = 649
Score = 30.3 bits (65), Expect = 1.3
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 2/101 (1%)
Frame = +2
Query: 44 LNDNLRKKVENILPRLFDNITDYFEGNDSAVCCLCHGDFRPNNIMMKEIDGEISETIPID 223
L L+ K + + L I + EG V CL HG + ++K + G I + D
Sbjct: 324 LQKKLKAKKKRLTEPLLVRIMNTREGLKIGVSCLKHGSAKDRKKIIKSLKGHIMKLALSD 383
Query: 224 YQ--LIYYGCPIIDFLYFVFTATDKEFRRAHLTHLKTLYYD 340
Y L+ ++D V +E + HLK L +D
Sbjct: 384 YGCILLVAILSVVDDTKLVTKIVIQELAK----HLKQLIFD 420
>10_01_0028 -
359988-359996,360228-360332,360415-360536,360676-360763,
360988-361056,361132-361461,361544-361610,361695-361753,
361838-362056,362224-362289,362370-362500,362683-362782,
362864-363001,363111-363218,363627-363723,363806-364257
Length = 719
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = +2
Query: 32 TLNFLNDNLRKKVENILPRLFDNITDYFEGNDSAVCCLCHGDFRP-----NNIMMKEIDG 196
TL L+D++ K E IT++FEG D C FR ++IMM+ D
Sbjct: 172 TLYCLHDDVYVKAEEDKADYIGRITEFFEGTDHCHYFTCRWFFRAEDTVISSIMMENADD 231
Query: 197 E 199
E
Sbjct: 232 E 232
>12_01_0356 -
2707820-2708395,2708475-2708705,2709071-2709190,
2709281-2709401,2711588-2712027
Length = 495
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -3
Query: 597 NPHSMKSSTVPWILSLYLSCKVNDILPRSASVMSGTSFSSTNIKG 463
+P S SS+ YL+ D+LPR +S SG+S ST G
Sbjct: 15 SPASRSSSSSSSSSLRYLATSDGDVLPRRSSSGSGSSLGSTGSLG 59
>03_04_0092 + 17255548-17256046,17257838-17258262
Length = 307
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +2
Query: 65 KVENILPRLFDN-ITDYFEGNDSAVCCLCHGDFR-PNNIMMKEIDGEISETI 214
KVE R D + Y +G D ++ C+CHG F P + G++S +
Sbjct: 243 KVEGPNGRKIDGFLYKYRKGEDVSIMCVCHGKFHSPAEFVKHAGGGDVSNPL 294
>05_06_0207 +
26377836-26378201,26379785-26379906,26380025-26380220,
26380642-26380759,26380869-26380916,26380995-26381095,
26381178-26381285
Length = 352
Score = 28.3 bits (60), Expect = 5.2
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = +2
Query: 146 CHGDFRPNNIMMKEIDGEISETIPIDYQLIYYGCPIIDFL-YFVFTATDKEFRRAHLTHL 322
CH D + NIM ID E IDY+ +G D +F A D + H+
Sbjct: 207 CHNDLQYGNIM---IDEETKLLTIIDYEYASFGPVAYDIANHFCEMAADYHSEKPHILDY 263
Query: 323 KTLYYDT 343
T Y DT
Sbjct: 264 -TKYPDT 269
>04_03_0201 - 12586324-12587131,12590080-12591512
Length = 746
Score = 28.3 bits (60), Expect = 5.2
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2
Query: 140 CLCHGDFRPNNIMMKE 187
C+ HGD +P+NIM+ E
Sbjct: 499 CVVHGDIKPSNIMLDE 514
>11_04_0423 - 17498569-17498932,17499217-17499992,17503439-17504617
Length = 772
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 206 ETIPIDYQLIYYGCPIIDFLYFVFTATDKEFRRAH 310
ET+ + YQ++Y CP I F + FTA F H
Sbjct: 482 ETLKV-YQILYQACPYIKFAH--FTANQAIFEAFH 513
>07_03_1214 + 24931142-24932314,24934177-24934434
Length = 476
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 413 DYKKKLDYGLIVTILYCPFMFVDENDVPDITEAD 514
DY+ K+ +G+I T+ Y M DEN+ P+ + D
Sbjct: 138 DYRSKV-FGMIRTLKYLDKMDADENERPESDDDD 170
>08_01_0092 +
673271-673452,673546-673621,674043-674104,674504-674606,
674811-674852,674962-675123
Length = 208
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 500 ITEADLGNISFTLHDKYKD-KIQGTVEDFIE 589
+ EAD+G I F+ H K D GT+E+ IE
Sbjct: 38 LCEADIGIIIFSAHGKLYDLATTGTMEELIE 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,450,059
Number of Sequences: 37544
Number of extensions: 249044
Number of successful extensions: 661
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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