Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0619
         (617 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_27934| Best HMM Match : Complex1_30kDa (HMM E-Value=1.2)            28   7.0  
SB_43682| Best HMM Match : CcoS (HMM E-Value=4.1)                      27   9.2  

>SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1499

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 299 RRAHLTHLKTLYYDTMQNFLEYFD 370
           RR HLTH KT+   T+Q   +Y D
Sbjct: 400 RRLHLTHKKTMVSSTLQVITQYSD 423


>SB_27934| Best HMM Match : Complex1_30kDa (HMM E-Value=1.2)
          Length = 385

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 9/58 (15%)
 Frame = +2

Query: 296 FRRAHLTHLKTLYYDTMQ--NFLEYFDISIESV-----YSKTDFDND--YKKKLDYGL 442
           + R  L  L++ ++  +Q  NF++YFD+++E V     Y+   +DN    K+ +DYG+
Sbjct: 186 YDRYQLFRLESGFHHWVQHVNFIQYFDLNVEHVETLWYYAYQLWDNPTLRKQAMDYGI 243


>SB_43682| Best HMM Match : CcoS (HMM E-Value=4.1)
          Length = 187

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +1

Query: 454 FVLPLYVCGRERRTRHY 504
           FVL +YVC R RR R Y
Sbjct: 42  FVLAIYVCVRNRRQRQY 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,656,896
Number of Sequences: 59808
Number of extensions: 327155
Number of successful extensions: 753
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)