BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= an--0619 (617 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0 SB_27934| Best HMM Match : Complex1_30kDa (HMM E-Value=1.2) 28 7.0 SB_43682| Best HMM Match : CcoS (HMM E-Value=4.1) 27 9.2 >SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1499 Score = 29.1 bits (62), Expect = 3.0 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = +2 Query: 299 RRAHLTHLKTLYYDTMQNFLEYFD 370 RR HLTH KT+ T+Q +Y D Sbjct: 400 RRLHLTHKKTMVSSTLQVITQYSD 423 >SB_27934| Best HMM Match : Complex1_30kDa (HMM E-Value=1.2) Length = 385 Score = 27.9 bits (59), Expect = 7.0 Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 9/58 (15%) Frame = +2 Query: 296 FRRAHLTHLKTLYYDTMQ--NFLEYFDISIESV-----YSKTDFDND--YKKKLDYGL 442 + R L L++ ++ +Q NF++YFD+++E V Y+ +DN K+ +DYG+ Sbjct: 186 YDRYQLFRLESGFHHWVQHVNFIQYFDLNVEHVETLWYYAYQLWDNPTLRKQAMDYGI 243 >SB_43682| Best HMM Match : CcoS (HMM E-Value=4.1) Length = 187 Score = 27.5 bits (58), Expect = 9.2 Identities = 11/17 (64%), Positives = 12/17 (70%) Frame = +1 Query: 454 FVLPLYVCGRERRTRHY 504 FVL +YVC R RR R Y Sbjct: 42 FVLAIYVCVRNRRQRQY 58 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,656,896 Number of Sequences: 59808 Number of extensions: 327155 Number of successful extensions: 753 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 731 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 753 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1524174750 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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