BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= an--0619 (617 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g13550.1 68414.m01588 expressed protein ; expression support... 31 0.81 At5g15950.1 68418.m01865 adenosylmethionine decarboxylase family... 30 1.4 At1g13530.1 68414.m01586 expressed protein ; expression support... 29 2.5 At4g32920.1 68417.m04685 glycine-rich protein 27 7.5 At3g49680.1 68416.m05431 branched-chain amino acid aminotransfer... 27 7.5 At4g09760.2 68417.m01603 choline kinase, putative similar to GmC... 27 10.0 At4g09760.1 68417.m01602 choline kinase, putative similar to GmC... 27 10.0 At1g13500.1 68414.m01583 hypothetical protein 27 10.0 >At1g13550.1 68414.m01588 expressed protein ; expression supported by MPSS Length = 394 Score = 30.7 bits (66), Expect = 0.81 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = +2 Query: 428 LDYGLIVTILYCPFMFVDENDVPDITEADLGNISFTLHDKYKD 556 LD ++V Y PF+FV E D+ D + + + TLH ++++ Sbjct: 218 LDISVVVGKWYVPFIFVKEGDIIDQVKISM-YYNMTLHQRWEE 259 >At5g15950.1 68418.m01865 adenosylmethionine decarboxylase family protein contains Pfam profile: PF01536 adenosylmethionine decarboxylase Length = 362 Score = 29.9 bits (64), Expect = 1.4 Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 1/100 (1%) Frame = +2 Query: 143 LCHGDFRPNNIMMKEIDGEISETIPIDYQLIYYGCPIIDFLYFVFTATDKEFRRAHLTHL 322 +C +F P M I+G+ TI + P F Y F A +F L+HL Sbjct: 221 ICDFEFEPCGYSMNSIEGDAISTIHV--------TPEDGFSYASFEAVGYDFTTMDLSHL 272 Query: 323 KTLYYDTMQNFLEYFDISIESVYSKTDFDNDYKKKL-DYG 439 + + + F +++ S ++ +D+ L DYG Sbjct: 273 VSKVLTCFKP--KQFSVAVHSTVAQKSYDSGLSVDLDDYG 310 >At1g13530.1 68414.m01586 expressed protein ; expression supported by MPSS Length = 385 Score = 29.1 bits (62), Expect = 2.5 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%) Frame = +2 Query: 431 DYGLIVTI--LYCPFMFVDENDVPDITEADLGNISFTLHDKYKD 556 D+G V + Y PF+FV E D D + + S TLH ++++ Sbjct: 207 DFGKSVVVGKWYVPFLFVKEGDAKDQMKKSM-YYSMTLHQRFEE 249 >At4g32920.1 68417.m04685 glycine-rich protein Length = 1432 Score = 27.5 bits (58), Expect = 7.5 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = +2 Query: 119 GNDSAVCCLCHGDFRPNNIMMKEIDGEISETIPIDYQLI 235 G+D A+C LC + P+ + + G ++ET P Y+ I Sbjct: 816 GSDKALCHLCPANDIPHRAVYVTVRGGVAET-PCPYKCI 853 >At3g49680.1 68416.m05431 branched-chain amino acid aminotransferase 3 / branched-chain amino acid transaminase 3 (BCAT3) identical to SP|Q9M401 Branched-chain amino acid aminotransferase 3, chloroplast precursor (EC 2.6.1.42) (Atbcat-3){Arabidopsis thaliana} Length = 413 Score = 27.5 bits (58), Expect = 7.5 Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 2/73 (2%) Frame = +2 Query: 200 ISETIPIDYQLIYYGCPIIDFLYFVFTATDKEFRRAHLTHLKTLYYDTMQNFLEYFDISI 379 ++E ID+ + +G D++Y + D EF + L + L Y Sbjct: 73 VTELADIDWDTVGFGLKPADYMYVMKCNIDGEFSKGELQRFGNIEISPSAGVLNYGQGLF 132 Query: 380 ESV--YSKTDFDN 412 E + Y K D +N Sbjct: 133 EGLKAYRKKDGNN 145 >At4g09760.2 68417.m01603 choline kinase, putative similar to GmCK2p choline kinase gi|1438881|gb|AAC49375 Length = 346 Score = 27.1 bits (57), Expect = 10.0 Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 1/74 (1%) Frame = +2 Query: 116 EGNDSAVCCLCHGDFRPNNIMMKEIDGEISETIPIDYQLIYYGCPIIDFL-YFVFTATDK 292 E N+ CH D + NIM ID E + IDY+ Y D +F A D Sbjct: 192 EVNNEQEIGFCHNDLQYGNIM---IDEETNAITIIDYEYASYNPIAYDIANHFCEMAADY 248 Query: 293 EFRRAHLTHLKTLY 334 H+ TLY Sbjct: 249 HSNTPHILDY-TLY 261 >At4g09760.1 68417.m01602 choline kinase, putative similar to GmCK2p choline kinase gi|1438881|gb|AAC49375 Length = 346 Score = 27.1 bits (57), Expect = 10.0 Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 1/74 (1%) Frame = +2 Query: 116 EGNDSAVCCLCHGDFRPNNIMMKEIDGEISETIPIDYQLIYYGCPIIDFL-YFVFTATDK 292 E N+ CH D + NIM ID E + IDY+ Y D +F A D Sbjct: 192 EVNNEQEIGFCHNDLQYGNIM---IDEETNAITIIDYEYASYNPIAYDIANHFCEMAADY 248 Query: 293 EFRRAHLTHLKTLY 334 H+ TLY Sbjct: 249 HSNTPHILDY-TLY 261 >At1g13500.1 68414.m01583 hypothetical protein Length = 386 Score = 27.1 bits (57), Expect = 10.0 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = +2 Query: 428 LDYGLIVTILYCPFMFVDENDVPDITEADLGNISFTLHDKYKD 556 LD ++V Y PF+FV E D D + S TL ++++ Sbjct: 208 LDNSVVVGKWYVPFLFVKEGDAKDQMYKSM-YYSMTLQQRFEE 249 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,757,334 Number of Sequences: 28952 Number of extensions: 232820 Number of successful extensions: 598 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 587 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 598 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1246162608 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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