Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0619
         (617 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13550.1 68414.m01588 expressed protein  ; expression support...    31   0.81 
At5g15950.1 68418.m01865 adenosylmethionine decarboxylase family...    30   1.4  
At1g13530.1 68414.m01586 expressed protein  ; expression support...    29   2.5  
At4g32920.1 68417.m04685 glycine-rich protein                          27   7.5  
At3g49680.1 68416.m05431 branched-chain amino acid aminotransfer...    27   7.5  
At4g09760.2 68417.m01603 choline kinase, putative similar to GmC...    27   10.0 
At4g09760.1 68417.m01602 choline kinase, putative similar to GmC...    27   10.0 
At1g13500.1 68414.m01583 hypothetical protein                          27   10.0 

>At1g13550.1 68414.m01588 expressed protein  ; expression supported
           by MPSS
          Length = 394

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +2

Query: 428 LDYGLIVTILYCPFMFVDENDVPDITEADLGNISFTLHDKYKD 556
           LD  ++V   Y PF+FV E D+ D  +  +   + TLH ++++
Sbjct: 218 LDISVVVGKWYVPFIFVKEGDIIDQVKISM-YYNMTLHQRWEE 259


>At5g15950.1 68418.m01865 adenosylmethionine decarboxylase family
           protein contains Pfam profile: PF01536
           adenosylmethionine decarboxylase
          Length = 362

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 1/100 (1%)
 Frame = +2

Query: 143 LCHGDFRPNNIMMKEIDGEISETIPIDYQLIYYGCPIIDFLYFVFTATDKEFRRAHLTHL 322
           +C  +F P    M  I+G+   TI +         P   F Y  F A   +F    L+HL
Sbjct: 221 ICDFEFEPCGYSMNSIEGDAISTIHV--------TPEDGFSYASFEAVGYDFTTMDLSHL 272

Query: 323 KTLYYDTMQNFLEYFDISIESVYSKTDFDNDYKKKL-DYG 439
            +      +   + F +++ S  ++  +D+     L DYG
Sbjct: 273 VSKVLTCFKP--KQFSVAVHSTVAQKSYDSGLSVDLDDYG 310


>At1g13530.1 68414.m01586 expressed protein  ; expression supported
           by MPSS
          Length = 385

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +2

Query: 431 DYGLIVTI--LYCPFMFVDENDVPDITEADLGNISFTLHDKYKD 556
           D+G  V +   Y PF+FV E D  D  +  +   S TLH ++++
Sbjct: 207 DFGKSVVVGKWYVPFLFVKEGDAKDQMKKSM-YYSMTLHQRFEE 249


>At4g32920.1 68417.m04685 glycine-rich protein 
          Length = 1432

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 119 GNDSAVCCLCHGDFRPNNIMMKEIDGEISETIPIDYQLI 235
           G+D A+C LC  +  P+  +   + G ++ET P  Y+ I
Sbjct: 816 GSDKALCHLCPANDIPHRAVYVTVRGGVAET-PCPYKCI 853


>At3g49680.1 68416.m05431 branched-chain amino acid aminotransferase
           3 / branched-chain amino acid transaminase 3 (BCAT3)
           identical to SP|Q9M401 Branched-chain amino acid
           aminotransferase 3, chloroplast precursor (EC 2.6.1.42)
           (Atbcat-3){Arabidopsis thaliana}
          Length = 413

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
 Frame = +2

Query: 200 ISETIPIDYQLIYYGCPIIDFLYFVFTATDKEFRRAHLTHLKTLYYDTMQNFLEYFDISI 379
           ++E   ID+  + +G    D++Y +    D EF +  L     +        L Y     
Sbjct: 73  VTELADIDWDTVGFGLKPADYMYVMKCNIDGEFSKGELQRFGNIEISPSAGVLNYGQGLF 132

Query: 380 ESV--YSKTDFDN 412
           E +  Y K D +N
Sbjct: 133 EGLKAYRKKDGNN 145


>At4g09760.2 68417.m01603 choline kinase, putative similar to GmCK2p
           choline kinase gi|1438881|gb|AAC49375
          Length = 346

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
 Frame = +2

Query: 116 EGNDSAVCCLCHGDFRPNNIMMKEIDGEISETIPIDYQLIYYGCPIIDFL-YFVFTATDK 292
           E N+      CH D +  NIM   ID E +    IDY+   Y     D   +F   A D 
Sbjct: 192 EVNNEQEIGFCHNDLQYGNIM---IDEETNAITIIDYEYASYNPIAYDIANHFCEMAADY 248

Query: 293 EFRRAHLTHLKTLY 334
                H+    TLY
Sbjct: 249 HSNTPHILDY-TLY 261


>At4g09760.1 68417.m01602 choline kinase, putative similar to GmCK2p
           choline kinase gi|1438881|gb|AAC49375
          Length = 346

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
 Frame = +2

Query: 116 EGNDSAVCCLCHGDFRPNNIMMKEIDGEISETIPIDYQLIYYGCPIIDFL-YFVFTATDK 292
           E N+      CH D +  NIM   ID E +    IDY+   Y     D   +F   A D 
Sbjct: 192 EVNNEQEIGFCHNDLQYGNIM---IDEETNAITIIDYEYASYNPIAYDIANHFCEMAADY 248

Query: 293 EFRRAHLTHLKTLY 334
                H+    TLY
Sbjct: 249 HSNTPHILDY-TLY 261


>At1g13500.1 68414.m01583 hypothetical protein 
          Length = 386

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 428 LDYGLIVTILYCPFMFVDENDVPDITEADLGNISFTLHDKYKD 556
           LD  ++V   Y PF+FV E D  D     +   S TL  ++++
Sbjct: 208 LDNSVVVGKWYVPFLFVKEGDAKDQMYKSM-YYSMTLQQRFEE 249


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,757,334
Number of Sequences: 28952
Number of extensions: 232820
Number of successful extensions: 598
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)