Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0617
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.1  
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    26   5.1  
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    25   9.0  
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    25   9.0  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    25   9.0  
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    25   9.0  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   9.0  

>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 522 IFILQKRAIRAIYNMHTRESLT 587
           +F L  +A++ +YN HTRE  T
Sbjct: 66  MFDLATKALQTLYNSHTREGET 87


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 18/58 (31%), Positives = 31/58 (53%)
 Frame = -1

Query: 430 SSVYVRIFFTANAAELSLFANLHM*GPHCSLESTVIPRKTVESTSSSVSPLTMILVST 257
           SSV +    +++++  SL + L        L+ST++  +T ES S ++S  T  L ST
Sbjct: 227 SSVTLASMPSSHSSTASLLSPLDTTSFSTKLDSTILALETDESLSRTISYATTSLPST 284


>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/47 (25%), Positives = 20/47 (42%)
 Frame = +3

Query: 360 ICKLANRLSSAAFAVKKIRTYTDEDTARLVYFSYFHSVMSYGILLWG 500
           +C     +   A ++    T  D     L Y  YF+S M+  ++ WG
Sbjct: 471 LCACVPLIPGMAMSINPSITMPD-GVIHLYYIGYFYSFMTAFLIYWG 516


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 343 SLESTVIPRKTVESTSSSVSPLTM 272
           SL  ++ P +T+  +SSSV+PL +
Sbjct: 372 SLMESIFPEQTIIRSSSSVTPLQL 395


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +1

Query: 457 VIFIVLCPMAFCCGAMLPMSKRFSSCRRGLFVLFIICTRGNP 582
           V     C +A CC      S  F+     LFV+ I+ T   P
Sbjct: 205 VFLYTTCVLAMCCILCCLGSAIFAKASNALFVVIILSTISIP 246


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 124 RVLQSSVTLNNVRDSL*YYLDIFFAYPQLLTSKVI 228
           R++QSS  L  + DSL Y  D  F   ++L+++ I
Sbjct: 315 RIMQSSKQLVTLADSLCYASDNAFVVKEILSNRHI 349


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +3

Query: 258 VDTNIIVSGETLELVDST-VFL 320
           ++TN  V GET+  V+ST +FL
Sbjct: 382 IETNYFVKGETITFVNSTGIFL 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,400,758
Number of Sequences: 5004
Number of extensions: 49173
Number of successful extensions: 135
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)