BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= an--0617 (628 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 5.1 SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 26 5.1 SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c... 25 9.0 SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 25 9.0 SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc... 25 9.0 SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 25 9.0 SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 9.0 >SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 601 Score = 25.8 bits (54), Expect = 5.1 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = +3 Query: 522 IFILQKRAIRAIYNMHTRESLT 587 +F L +A++ +YN HTRE T Sbjct: 66 MFDLATKALQTLYNSHTREGET 87 >SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1|||Manual Length = 753 Score = 25.8 bits (54), Expect = 5.1 Identities = 18/58 (31%), Positives = 31/58 (53%) Frame = -1 Query: 430 SSVYVRIFFTANAAELSLFANLHM*GPHCSLESTVIPRKTVESTSSSVSPLTMILVST 257 SSV + +++++ SL + L L+ST++ +T ES S ++S T L ST Sbjct: 227 SSVTLASMPSSHSSTASLLSPLDTTSFSTKLDSTILALETDESLSRTISYATTSLPST 284 >SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr 2|||Manual Length = 559 Score = 25.0 bits (52), Expect = 9.0 Identities = 12/47 (25%), Positives = 20/47 (42%) Frame = +3 Query: 360 ICKLANRLSSAAFAVKKIRTYTDEDTARLVYFSYFHSVMSYGILLWG 500 +C + A ++ T D L Y YF+S M+ ++ WG Sbjct: 471 LCACVPLIPGMAMSINPSITMPD-GVIHLYYIGYFYSFMTAFLIYWG 516 >SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pombe|chr 1|||Manual Length = 566 Score = 25.0 bits (52), Expect = 9.0 Identities = 10/24 (41%), Positives = 17/24 (70%) Frame = -1 Query: 343 SLESTVIPRKTVESTSSSVSPLTM 272 SL ++ P +T+ +SSSV+PL + Sbjct: 372 SLMESIFPEQTIIRSSSSVTPLQL 395 >SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces pombe|chr 2|||Manual Length = 1050 Score = 25.0 bits (52), Expect = 9.0 Identities = 13/42 (30%), Positives = 17/42 (40%) Frame = +1 Query: 457 VIFIVLCPMAFCCGAMLPMSKRFSSCRRGLFVLFIICTRGNP 582 V C +A CC S F+ LFV+ I+ T P Sbjct: 205 VFLYTTCVLAMCCILCCLGSAIFAKASNALFVVIILSTISIP 246 >SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccharomyces pombe|chr 1|||Manual Length = 549 Score = 25.0 bits (52), Expect = 9.0 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = +1 Query: 124 RVLQSSVTLNNVRDSL*YYLDIFFAYPQLLTSKVI 228 R++QSS L + DSL Y D F ++L+++ I Sbjct: 315 RIMQSSKQLVTLADSLCYASDNAFVVKEILSNRHI 349 >SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|||Manual Length = 612 Score = 25.0 bits (52), Expect = 9.0 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%) Frame = +3 Query: 258 VDTNIIVSGETLELVDST-VFL 320 ++TN V GET+ V+ST +FL Sbjct: 382 IETNYFVKGETITFVNSTGIFL 403 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,400,758 Number of Sequences: 5004 Number of extensions: 49173 Number of successful extensions: 135 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 133 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 135 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 277683324 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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