Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0617
(628 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0854 - 32267047-32267298,32267383-32268194,32268289-322684... 33 0.19
02_05_0853 + 32261705-32261794,32261895-32262027,32262117-322629... 33 0.19
01_01_0585 - 4328725-4329030,4329333-4329551,4329752-4329820,432... 31 0.99
06_03_1380 + 29747187-29747267,29747349-29747481,29747758-297477... 29 3.0
07_03_1756 - 29239137-29239325,29239741-29240259,29240693-292408... 29 4.0
04_01_0097 - 998766-999383,999479-999861,1000021-1000398,1000486... 28 7.0
09_04_0391 + 17248698-17248790,17248913-17249851,17249942-17250223 27 9.2
06_03_1455 + 30264023-30264174,30265930-30266070,30266328-302664... 27 9.2
03_02_0741 - 10857656-10857844,10858315-10858848,10859516-108598... 27 9.2
>02_05_0854 -
32267047-32267298,32267383-32268194,32268289-32268421,
32268530-32268619
Length = 428
Score = 33.1 bits (72), Expect = 0.19
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Frame = +3
Query: 255 QVDTNIIVSGETLELVDST----VFLGITVDSRLQWGPH-ICK 368
QV +I+++ T E D +F G T DSRL WGPH IC+
Sbjct: 108 QVIADIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICR 150
>02_05_0853 +
32261705-32261794,32261895-32262027,32262117-32262928,
32263020-32263271
Length = 428
Score = 33.1 bits (72), Expect = 0.19
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Frame = +3
Query: 255 QVDTNIIVSGETLELVDST----VFLGITVDSRLQWGPH-ICK 368
QV +I+++ T E D +F G T DSRL WGPH IC+
Sbjct: 108 QVIADIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICR 150
>01_01_0585 -
4328725-4329030,4329333-4329551,4329752-4329820,
4329925-4331469,4332220-4332429,4332563-4332713,
4332791-4333031,4333898-4333956,4334379-4334653,
4334813-4334955,4335034-4335088,4335181-4335258,
4335351-4335478,4335533-4335575
Length = 1173
Score = 30.7 bits (66), Expect = 0.99
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Frame = -1
Query: 421 YVRIFFTANAAELSLFANLHM*GPHCSLEST---VIPRKTVESTSSSVSPLTMILVSTCL 251
YV A + EL LF + G H +L+ + VIP KT ++ + ++ ++ T
Sbjct: 686 YVLAAVCALSCELQLFPFISKNGNHSNLKDSIKIVIPGKTTGISNELHNSISSAILHTRR 745
Query: 250 TLGVVKAQ*PSRLEAVGRQKKYRDN 176
LG+++A + +VG Y N
Sbjct: 746 ILGILEALFSLKPSSVGTSWSYSSN 770
>06_03_1380 +
29747187-29747267,29747349-29747481,29747758-29747770,
29748027-29748118,29749011-29749831,29750375-29750677
Length = 480
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +3
Query: 312 VFLGITVDSRLQWGPH-ICK 368
+F G T D RL WGPH IC+
Sbjct: 163 IFEGGTPDGRLDWGPHMICR 182
>07_03_1756 -
29239137-29239325,29239741-29240259,29240693-29240800,
29240856-29241155,29241730-29241831,29243042-29243209,
29243878-29243991,29244184-29244288,29244372-29244502,
29244794-29244918,29245001-29245172,29245277-29245316,
29245636-29245722,29245803-29245868,29246412-29246510,
29246714-29246836,29247066-29247107,29247195-29247260,
29247362-29247553,29247672-29247737,29248839-29249141
Length = 1038
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/37 (35%), Positives = 26/37 (70%), Gaps = 3/37 (8%)
Frame = +1
Query: 175 YYLDIFFAYPQLL---TSKVIELLPHPMLDK*TLISL 276
+YLD+ ++L T+ VIE++P+P+LD+ +I++
Sbjct: 567 HYLDVPIDLSKVLFVCTANVIEMIPNPLLDRMEIIAI 603
>04_01_0097 -
998766-999383,999479-999861,1000021-1000398,
1000486-1000711,1000799-1001323,1003032-1003164,
1004353-1004435,1004645-1005349,1005483-1005556,
1006290-1006392,1006485-1006727
Length = 1156
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = +3
Query: 366 KLANRLSSAAFAVKKIRTYTDEDTAR-LVYFSYFHSVMSYGILLWGNAADVETIFILQKR 542
+L +RL + V +E A L HSV S G L W + V F + R
Sbjct: 530 RLCSRLKNKGLLVDTFHVSVEEQVAMFLKKVGQHHSVPSVGFLFWRSGETVSRYFHIVLR 589
Query: 543 AI 548
A+
Sbjct: 590 AM 591
>09_04_0391 + 17248698-17248790,17248913-17249851,17249942-17250223
Length = 437
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Frame = +3
Query: 231 AFTTPNVRQVDTNIIVSGETLELVDST----VFLGITVDSRLQWGPH-IC 365
AF + +++ V +I+++ + DS +F G T DSRL WGP IC
Sbjct: 102 AFHSKSIKCV-ADIVINHRCADYKDSRGIYCIFEGGTPDSRLDWGPDMIC 150
>06_03_1455 +
30264023-30264174,30265930-30266070,30266328-30266430,
30266510-30266659,30267184-30267229,30267383-30267738
Length = 315
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -1
Query: 187 YRDNIKDYLVHYLASHYFGGRGGCAY 110
YRD +DY H A Y+ GRGG Y
Sbjct: 247 YRDT-RDYSPHRDARDYYDGRGGRGY 271
>03_02_0741 -
10857656-10857844,10858315-10858848,10859516-10859824,
10860521-10860622,10861446-10861613,10862734-10862847,
10863003-10863107,10863206-10863336,10863680-10863804,
10863890-10864061,10864411-10864505,10864771-10864841,
10864923-10865009,10865119-10865184,10865401-10865499,
10866631-10866672,10866757-10866822,10866910-10867101,
10867224-10867289,10868473-10868811
Length = 1023
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
Frame = +1
Query: 175 YYLDIFFAYPQLL---TSKVIELLPHPMLDK*TLISL 276
+YLD+ ++L T+ VIE++P P+LD+ +I++
Sbjct: 580 HYLDVPIDLSKVLFVCTANVIEMIPGPLLDRMEIITI 616
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,849,496
Number of Sequences: 37544
Number of extensions: 293763
Number of successful extensions: 656
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -