Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0617
         (628 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.4  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   9.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   9.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +3

Query: 531 LQKRAIRAIYNMHTRESLTDKFKEI 605
           ++  A   +YN+HT E   +K + +
Sbjct: 374 IESNAFLPLYNLHTLELSDNKLRTV 398


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -2

Query: 372 LTCICEDPTAAWNQLLYQEKL 310
           LT  C D  A WN L  Q  L
Sbjct: 431 LTMSCSDKIARWNVLGVQGAL 451


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 417 TYTDEDTARLVYFSYFHSVMSYGILLWGNAADVETI 524
           TY D      + FS+  SV  Y + L G+    E++
Sbjct: 377 TYMDSGYTNEIDFSFPDSVSDYPLELKGSPDGFESV 412


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,751
Number of Sequences: 438
Number of extensions: 3286
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)