Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0617
         (628 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial a...    29   2.5  
At2g31990.1 68415.m03908 exostosin family protein contains Pfam ...    28   4.4  
At2g17033.2 68415.m01965 pentatricopeptide (PPR) repeat-containi...    27   7.7  
At2g17033.1 68415.m01964 pentatricopeptide (PPR) repeat-containi...    27   7.7  
At1g52910.1 68414.m05983 expressed protein                             27   7.7  

>At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial
           almost identical to Lon protease homolog 2
           mitochondrial precursor SP:P93655, GI:1848290 from
           [Arabidopsis thaliana]
          Length = 940

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/37 (35%), Positives = 26/37 (70%), Gaps = 3/37 (8%)
 Frame = +1

Query: 175 YYLDIFFAYPQLL---TSKVIELLPHPMLDK*TLISL 276
           +YLD+     ++L   T+ VI+++P+P+LD+  +IS+
Sbjct: 563 HYLDVTIDLSKVLFVCTANVIDMIPNPLLDRMEVISI 599


>At2g31990.1 68415.m03908 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 479

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +3

Query: 336 SRLQWGPHICKLANRLSSAAFAVKKIRTYTDEDTARLVYFSYFHSVMSYGILLW 497
           SR  WG +   L+  L+    +++  R+ T  +   + Y +YFH   +  IL W
Sbjct: 226 SRSAWGTNFMLLSESLNLTFLSIE--RSLTSHNEFAIPYPTYFHPTSTPEILQW 277


>At2g17033.2 68415.m01965 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 505

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +3

Query: 327 TVDSRLQWGPHICKLANRLSSAAFAVKKIRTYTDEDTARLVYFSYFHSVMSYGI 488
           T +S L   P I  +   L S   ++ ++RT+ +ED A LV+     SV+   I
Sbjct: 351 TYNSVLNSCPTIISMLKDLDSCPVSLSELRTFLNEDEALLVHELTQSSVLDEAI 404


>At2g17033.1 68415.m01964 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 504

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +3

Query: 327 TVDSRLQWGPHICKLANRLSSAAFAVKKIRTYTDEDTARLVYFSYFHSVMSYGI 488
           T +S L   P I  +   L S   ++ ++RT+ +ED A LV+     SV+   I
Sbjct: 350 TYNSVLNSCPTIISMLKDLDSCPVSLSELRTFLNEDEALLVHELTQSSVLDEAI 403


>At1g52910.1 68414.m05983 expressed protein
          Length = 175

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +1

Query: 448 FISVIFIVLCPMAFCCG-AMLPMSKRFSSCRRGLFVLFIIC 567
           FIS + I++    FCCG A+ P   R  +C  G+ +LF+IC
Sbjct: 63  FISQVIIMVASRCFCCGKALKPGGSR--AC--GI-MLFLIC 98


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,248,439
Number of Sequences: 28952
Number of extensions: 248025
Number of successful extensions: 604
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)