BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= an--0615 (683 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 33 0.038 SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 30 0.36 SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 27 2.5 SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 26 5.8 SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 26 5.8 SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom... 25 7.7 SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c... 25 7.7 SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch... 25 7.7 SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 25 7.7 >SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosaccharomyces pombe|chr mitochondrial|||Manual Length = 807 Score = 33.1 bits (72), Expect = 0.038 Identities = 13/26 (50%), Positives = 19/26 (73%) Frame = +3 Query: 21 MGVPQGSILGPFLFLVYINDLPKFIE 98 +G PQGSI+ P L +Y++ L +FIE Sbjct: 419 VGTPQGSIVSPILANIYLHQLDEFIE 444 >SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 988 Score = 29.9 bits (64), Expect = 0.36 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = +3 Query: 3 SGVLLNMGVPQGSILGPFLFLVYINDL 83 S L +G+PQGSIL FL Y+ DL Sbjct: 696 SQYLQKVGIPQGSILSSFLCHFYMEDL 722 >SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1210 Score = 27.1 bits (57), Expect = 2.5 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +3 Query: 63 LVYINDLPKFIETRHEVVLFADDTSLLFK 149 LVY+ + F+E H VLF D +S F+ Sbjct: 823 LVYVIENTSFVEASHISVLFEDSSSKAFE 851 >SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 3131 Score = 25.8 bits (54), Expect = 5.8 Identities = 13/49 (26%), Positives = 24/49 (48%) Frame = +3 Query: 57 LFLVYINDLPKFIETRHEVVLFADDTSLLFKIKRQLEDYDDVNDAISRV 203 + L ++LP+ + + D S++ + +L D VNDAIS + Sbjct: 1236 ILLKLASNLPEMLSIANAFSANVDAPSVMTLLSEELYSIDTVNDAISNL 1284 >SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1|||Manual Length = 753 Score = 25.8 bits (54), Expect = 5.8 Identities = 18/58 (31%), Positives = 31/58 (53%) Frame = -2 Query: 460 SSVYVRIFFTANAAELSLFANLHM*GPHCSLESTVIPRKTVESTSSSVSPLTMILVST 287 SSV + +++++ SL + L L+ST++ +T ES S ++S T L ST Sbjct: 227 SSVTLASMPSSHSSTASLLSPLDTTSFSTKLDSTILALETDESLSRTISYATTSLPST 284 >SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharomyces pombe|chr 1|||Manual Length = 441 Score = 25.4 bits (53), Expect = 7.7 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Frame = +1 Query: 577 FVLFIICTR-GNP*GTSLRKSKF*L*RPNTFLKIY 678 + ++++CT GNP +SL K KF PN ++ Sbjct: 261 YTVYMVCTDFGNPNTSSLEKPKFDYLPPNILQSVH 295 >SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 716 Score = 25.4 bits (53), Expect = 7.7 Identities = 17/62 (27%), Positives = 30/62 (48%) Frame = +3 Query: 261 KFTTPNVRQVDTNIIVSGETLELVDSTVFLGITVDSRLQWGPHICKLANRLSSAAFAVKK 440 KF TP++ + I+ G L+ + G+T DS + P K N++ + + A K Sbjct: 71 KFHTPHLCNLKDFIVYGGREQHLMFPLLRAGLTNDSNRETFPLCIKKYNKIEN-SIACKY 129 Query: 441 IR 446 I+ Sbjct: 130 IK 131 >SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosaccharomyces pombe|chr 1|||Manual Length = 468 Score = 25.4 bits (53), Expect = 7.7 Identities = 13/57 (22%), Positives = 28/57 (49%) Frame = -1 Query: 296 SVYLSNIGCGKFYTFCFFVI**QIINTKPMYHARDSIIHIVIIFQLSFNFKQ*GCII 126 S+ ++ GC FF +++ KP +A + +V++++ +F GC+I Sbjct: 168 SLLIAESGCNDGMAVPFFYFAIKLLTVKPSRNAGRDWVLLVVLYECAFGIFF-GCVI 223 >SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr 1|||Manual Length = 872 Score = 25.4 bits (53), Expect = 7.7 Identities = 12/40 (30%), Positives = 25/40 (62%) Frame = -2 Query: 649 KVRILISLNLSLKDSLVCIL*IARIALFCRMKIVSTSAAL 530 K ++ ++ ++SL+++ VC + R L C+ ++ T AAL Sbjct: 130 KQKLEVNSSVSLENTNVCKASLYRFMLMCKNELGLTDAAL 169 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,907,429 Number of Sequences: 5004 Number of extensions: 61232 Number of successful extensions: 180 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 169 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 180 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 315915086 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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