Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0615
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    33   0.038
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    30   0.36 
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    27   2.5  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   5.8  
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    26   5.8  
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    25   7.7  
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    25   7.7  
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch...    25   7.7  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    25   7.7  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 33.1 bits (72), Expect = 0.038
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +3

Query: 21  MGVPQGSILGPFLFLVYINDLPKFIE 98
           +G PQGSI+ P L  +Y++ L +FIE
Sbjct: 419 VGTPQGSIVSPILANIYLHQLDEFIE 444


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +3

Query: 3   SGVLLNMGVPQGSILGPFLFLVYINDL 83
           S  L  +G+PQGSIL  FL   Y+ DL
Sbjct: 696 SQYLQKVGIPQGSILSSFLCHFYMEDL 722


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 63  LVYINDLPKFIETRHEVVLFADDTSLLFK 149
           LVY+ +   F+E  H  VLF D +S  F+
Sbjct: 823 LVYVIENTSFVEASHISVLFEDSSSKAFE 851


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +3

Query: 57   LFLVYINDLPKFIETRHEVVLFADDTSLLFKIKRQLEDYDDVNDAISRV 203
            + L   ++LP+ +   +      D  S++  +  +L   D VNDAIS +
Sbjct: 1236 ILLKLASNLPEMLSIANAFSANVDAPSVMTLLSEELYSIDTVNDAISNL 1284


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 18/58 (31%), Positives = 31/58 (53%)
 Frame = -2

Query: 460 SSVYVRIFFTANAAELSLFANLHM*GPHCSLESTVIPRKTVESTSSSVSPLTMILVST 287
           SSV +    +++++  SL + L        L+ST++  +T ES S ++S  T  L ST
Sbjct: 227 SSVTLASMPSSHSSTASLLSPLDTTSFSTKLDSTILALETDESLSRTISYATTSLPST 284


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 577 FVLFIICTR-GNP*GTSLRKSKF*L*RPNTFLKIY 678
           + ++++CT  GNP  +SL K KF    PN    ++
Sbjct: 261 YTVYMVCTDFGNPNTSSLEKPKFDYLPPNILQSVH 295


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = +3

Query: 261 KFTTPNVRQVDTNIIVSGETLELVDSTVFLGITVDSRLQWGPHICKLANRLSSAAFAVKK 440
           KF TP++  +   I+  G    L+   +  G+T DS  +  P   K  N++ + + A K 
Sbjct: 71  KFHTPHLCNLKDFIVYGGREQHLMFPLLRAGLTNDSNRETFPLCIKKYNKIEN-SIACKY 129

Query: 441 IR 446
           I+
Sbjct: 130 IK 131


>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/57 (22%), Positives = 28/57 (49%)
 Frame = -1

Query: 296 SVYLSNIGCGKFYTFCFFVI**QIINTKPMYHARDSIIHIVIIFQLSFNFKQ*GCII 126
           S+ ++  GC       FF    +++  KP  +A    + +V++++ +F     GC+I
Sbjct: 168 SLLIAESGCNDGMAVPFFYFAIKLLTVKPSRNAGRDWVLLVVLYECAFGIFF-GCVI 223


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = -2

Query: 649 KVRILISLNLSLKDSLVCIL*IARIALFCRMKIVSTSAAL 530
           K ++ ++ ++SL+++ VC   + R  L C+ ++  T AAL
Sbjct: 130 KQKLEVNSSVSLENTNVCKASLYRFMLMCKNELGLTDAAL 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,907,429
Number of Sequences: 5004
Number of extensions: 61232
Number of successful extensions: 180
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)