Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0615
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0854 - 32267047-32267298,32267383-32268194,32268289-322684...    33   0.21 
02_05_0853 + 32261705-32261794,32261895-32262027,32262117-322629...    33   0.21 
06_03_1380 + 29747187-29747267,29747349-29747481,29747758-297477...    29   3.4  
08_01_0025 - 184899-185384,185707-185940,187156-187341,188108-18...    28   7.9  
04_01_0097 - 998766-999383,999479-999861,1000021-1000398,1000486...    28   7.9  

>02_05_0854 -
           32267047-32267298,32267383-32268194,32268289-32268421,
           32268530-32268619
          Length = 428

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
 Frame = +3

Query: 285 QVDTNIIVSGETLELVDST----VFLGITVDSRLQWGPH-ICK 398
           QV  +I+++  T E  D      +F G T DSRL WGPH IC+
Sbjct: 108 QVIADIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICR 150


>02_05_0853 +
           32261705-32261794,32261895-32262027,32262117-32262928,
           32263020-32263271
          Length = 428

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
 Frame = +3

Query: 285 QVDTNIIVSGETLELVDST----VFLGITVDSRLQWGPH-ICK 398
           QV  +I+++  T E  D      +F G T DSRL WGPH IC+
Sbjct: 108 QVIADIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICR 150


>06_03_1380 +
           29747187-29747267,29747349-29747481,29747758-29747770,
           29748027-29748118,29749011-29749831,29750375-29750677
          Length = 480

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +3

Query: 342 VFLGITVDSRLQWGPH-ICK 398
           +F G T D RL WGPH IC+
Sbjct: 163 IFEGGTPDGRLDWGPHMICR 182


>08_01_0025 -
           184899-185384,185707-185940,187156-187341,188108-188158
          Length = 318

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -1

Query: 254 FCFFVI**QIINTKPMYHARDSIIHIVIIFQLSFNFKQ*GCIIS 123
           FC+FV    +I+  P Y+A  +I+ + I+  +  N++   C +S
Sbjct: 48  FCYFVAR-HLIHMFPAYNAGYAILAVTIVLSIYRNYRYFFCFVS 90


>04_01_0097 -
           998766-999383,999479-999861,1000021-1000398,
           1000486-1000711,1000799-1001323,1003032-1003164,
           1004353-1004435,1004645-1005349,1005483-1005556,
           1006290-1006392,1006485-1006727
          Length = 1156

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
 Frame = +3

Query: 396 KLANRLSSAAFAVKKIRTYTDEDTAR-LVYFSYFHSVMSYGILLWGNAADVETIFILQKR 572
           +L +RL +    V       +E  A  L      HSV S G L W +   V   F +  R
Sbjct: 530 RLCSRLKNKGLLVDTFHVSVEEQVAMFLKKVGQHHSVPSVGFLFWRSGETVSRYFHIVLR 589

Query: 573 AI 578
           A+
Sbjct: 590 AM 591


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,465,715
Number of Sequences: 37544
Number of extensions: 342985
Number of successful extensions: 761
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)