Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0615
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g31990.1 68415.m03908 exostosin family protein contains Pfam ...    28   5.0  
At1g58602.1 68414.m06655 disease resistance protein (CC-NBS-LRR ...    28   6.6  
At1g53790.1 68414.m06122 F-box family protein contains Pfam PF00...    28   6.6  
At2g39280.1 68415.m04823 RabGAP/TBC domain-containing protein co...    27   8.8  
At2g17033.2 68415.m01965 pentatricopeptide (PPR) repeat-containi...    27   8.8  
At2g17033.1 68415.m01964 pentatricopeptide (PPR) repeat-containi...    27   8.8  
At1g52910.1 68414.m05983 expressed protein                             27   8.8  

>At2g31990.1 68415.m03908 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 479

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +3

Query: 366 SRLQWGPHICKLANRLSSAAFAVKKIRTYTDEDTARLVYFSYFHSVMSYGILLW 527
           SR  WG +   L+  L+    +++  R+ T  +   + Y +YFH   +  IL W
Sbjct: 226 SRSAWGTNFMLLSESLNLTFLSIE--RSLTSHNEFAIPYPTYFHPTSTPEILQW 277


>At1g58602.1 68414.m06655 disease resistance protein (CC-NBS-LRR
           class), putative similar to diesease resistance protein
           rpp8 [Arabidopsis thaliana] gi|3901294|gb|AAC78631
          Length = 1138

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 85  QSLLKPVTRSYYSLMIHPYCLKLNDNWKI 171
           +S++ P    Y++    P CLK +D+WK+
Sbjct: 307 ESIVAPTNTKYFNFK--PECLKTDDSWKL 333


>At1g53790.1 68414.m06122 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 444

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +1

Query: 1   LPVSYLIWVFLRVPYWVPSYFLCISMIYQSLL 96
           +P+  L+ +F RVP    + F C+S +++S+L
Sbjct: 82  IPIDLLMDIFSRVPAKSIARFRCVSKLWESIL 113


>At2g39280.1 68415.m04823 RabGAP/TBC domain-containing protein
           contains Pfam profile PF00566: TBC domain
          Length = 771

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 21  MGVPQGSILGPFLFLVYINDLP-KFIETRHEVVLFADDTSLLFKIKRQLEDY 173
           +GV    + GP+   ++IN LP + +    +V+LF  +  +LF+    L ++
Sbjct: 403 LGVQVACVTGPWFLTIFINMLPWESVLRVWDVLLFEGNRVMLFRTALALMEF 454


>At2g17033.2 68415.m01965 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 505

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +3

Query: 357 TVDSRLQWGPHICKLANRLSSAAFAVKKIRTYTDEDTARLVYFSYFHSVMSYGI 518
           T +S L   P I  +   L S   ++ ++RT+ +ED A LV+     SV+   I
Sbjct: 351 TYNSVLNSCPTIISMLKDLDSCPVSLSELRTFLNEDEALLVHELTQSSVLDEAI 404


>At2g17033.1 68415.m01964 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 504

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +3

Query: 357 TVDSRLQWGPHICKLANRLSSAAFAVKKIRTYTDEDTARLVYFSYFHSVMSYGI 518
           T +S L   P I  +   L S   ++ ++RT+ +ED A LV+     SV+   I
Sbjct: 350 TYNSVLNSCPTIISMLKDLDSCPVSLSELRTFLNEDEALLVHELTQSSVLDEAI 403


>At1g52910.1 68414.m05983 expressed protein
          Length = 175

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +1

Query: 478 FISVIFIVLCPMAFCCG-AMLPMSKRFSSCRRGLFVLFIIC 597
           FIS + I++    FCCG A+ P   R  +C  G+ +LF+IC
Sbjct: 63  FISQVIIMVASRCFCCGKALKPGGSR--AC--GI-MLFLIC 98


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,685,393
Number of Sequences: 28952
Number of extensions: 300531
Number of successful extensions: 774
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)