Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0614
         (505 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||...    29   0.30 
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    26   3.7  
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos...    25   8.5  

>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 462

 Score = 29.5 bits (63), Expect = 0.30
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 356 RIQYRYLQVDLLSHGRYVPAKTRVVTNRVI*DYKLVQNGDMF 231
           ++Q +YLQV +  HG   P K R+ +  +  D+KL  N   F
Sbjct: 23  QLQLKYLQV-IFRHGERAPVKERLGSAGIPKDWKLCNNARRF 63


>SPAC6G9.04 |mug79||meiotically upregulated gene
            Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 258  IVSYNTVCHNTRLCRNVSTV*KEVYL*VPILYPTIPPSVQATR 386
            ++ Y +   +   C NVS + +E  L   +  P +PPS+ + R
Sbjct: 1080 LIFYKSDHLDPNACSNVSPIHREFGLQSCLASPNLPPSINSNR 1122


>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -1

Query: 433 KRMLSDSQIFIYFI--NLRVAWTEGGIVGYNIGTYR*TS 323
           KR ++ S + IY +     + W EG IVG   G Y  +S
Sbjct: 78  KRKVTGSDLEIYKVLKQFNLQWDEGPIVGGPYGPYEQSS 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,028,739
Number of Sequences: 5004
Number of extensions: 41485
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)