BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= an--0614 (505 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 06_01_1159 - 9852316-9852441,9852743-9852838,9852912-9852977,985... 29 2.1 11_06_0750 + 26917239-26918071,26918319-26920773 27 6.5 05_03_0314 + 12203589-12204675,12207915-12208861 27 8.6 >06_01_1159 - 9852316-9852441,9852743-9852838,9852912-9852977, 9853091-9853180,9853262-9853373,9853515-9853598, 9853864-9853940,9854823-9854873,9854924-9855031, 9855703-9855774,9856952-9857011,9857808-9857876, 9858005-9858088,9858212-9858295,9859106-9859198, 9859930-9860030,9861155-9861264,9863058-9863104, 9863693-9863778,9863940-9864012,9864454-9864540, 9864650-9865301,9866164-9867182,9867702-9867797 Length = 1180 Score = 29.1 bits (62), Expect = 2.1 Identities = 14/46 (30%), Positives = 22/46 (47%) Frame = +1 Query: 208 AILRCFVQNISPFCTSL*SHITRFVTTRVFAGTYLPCERRSTCRYL 345 +IL + N S C S RF +R G ++ C+R C+Y+ Sbjct: 975 SILFSDLDNDSRICPSCSEGTLRFKVSRYGEGYFIGCDRHPKCKYI 1020 >11_06_0750 + 26917239-26918071,26918319-26920773 Length = 1095 Score = 27.5 bits (58), Expect = 6.5 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = +2 Query: 275 GLSQHASLQERIYRVKGGLPVGTYIVSDNTA 367 G S S Q ++Y VKGG P+ ++V +T+ Sbjct: 330 GRSMEISAQRKVYMVKGG-PIDFFLVKKHTS 359 >05_03_0314 + 12203589-12204675,12207915-12208861 Length = 677 Score = 27.1 bits (57), Expect = 8.6 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +3 Query: 12 IAKDHLQRSGRSELRILKCPLSVNTVLICTSVEFLLISNPSA 137 +A+DH S +LR+ K L + TVL C S + N A Sbjct: 566 LAQDHDTVSSNLDLRVGKNELKITTVLGCRSRRDFMYDNDRA 607 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,134,545 Number of Sequences: 37544 Number of extensions: 229556 Number of successful extensions: 400 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 394 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 400 length of database: 14,793,348 effective HSP length: 77 effective length of database: 11,902,460 effective search space used: 1071221400 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -