Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0614
         (505 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1159 - 9852316-9852441,9852743-9852838,9852912-9852977,985...    29   2.1  
11_06_0750 + 26917239-26918071,26918319-26920773                       27   6.5  
05_03_0314 + 12203589-12204675,12207915-12208861                       27   8.6  

>06_01_1159 - 9852316-9852441,9852743-9852838,9852912-9852977,
            9853091-9853180,9853262-9853373,9853515-9853598,
            9853864-9853940,9854823-9854873,9854924-9855031,
            9855703-9855774,9856952-9857011,9857808-9857876,
            9858005-9858088,9858212-9858295,9859106-9859198,
            9859930-9860030,9861155-9861264,9863058-9863104,
            9863693-9863778,9863940-9864012,9864454-9864540,
            9864650-9865301,9866164-9867182,9867702-9867797
          Length = 1180

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 208  AILRCFVQNISPFCTSL*SHITRFVTTRVFAGTYLPCERRSTCRYL 345
            +IL   + N S  C S      RF  +R   G ++ C+R   C+Y+
Sbjct: 975  SILFSDLDNDSRICPSCSEGTLRFKVSRYGEGYFIGCDRHPKCKYI 1020


>11_06_0750 + 26917239-26918071,26918319-26920773
          Length = 1095

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 275 GLSQHASLQERIYRVKGGLPVGTYIVSDNTA 367
           G S   S Q ++Y VKGG P+  ++V  +T+
Sbjct: 330 GRSMEISAQRKVYMVKGG-PIDFFLVKKHTS 359


>05_03_0314 + 12203589-12204675,12207915-12208861
          Length = 677

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 12  IAKDHLQRSGRSELRILKCPLSVNTVLICTSVEFLLISNPSA 137
           +A+DH   S   +LR+ K  L + TVL C S    +  N  A
Sbjct: 566 LAQDHDTVSSNLDLRVGKNELKITTVLGCRSRRDFMYDNDRA 607


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,134,545
Number of Sequences: 37544
Number of extensions: 229556
Number of successful extensions: 400
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)