Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0614
         (505 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16165| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.41 
SB_38551| Best HMM Match : Peptidase_S8 (HMM E-Value=0)                28   3.8  
SB_3052| Best HMM Match : Peptidase_S8 (HMM E-Value=0)                 28   3.8  
SB_7216| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.8  

>SB_16165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
 Frame = +2

Query: 209 QF*DVSFRTY-LHFVLVYSL-----I*HGLSQHASLQERIYRVKG----GLPVGTYIVSD 358
           +F D  FR Y +  +L+ SL     +  G ++ A    R+Y+++     GLP    + S+
Sbjct: 98  KFADSYFRVYQIRRLLLQSLPNSPTLTSGSTKFADSSFRVYQIRRLLLQGLPNSPTLTSE 157

Query: 359 NTAFCPSYTKIYEINKNLRIG 421
           +T F  SY ++Y+I + L  G
Sbjct: 158 STKFADSYFRVYQIRRLLLQG 178



 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = +2

Query: 275 GLSQHASLQERIYRVKG----GLPVGTYIVSDNTAFCPSYTKIYEINKNL 412
           G ++ A    R+Y+++     GLP    + S +T F  SY ++Y+I + L
Sbjct: 64  GSTKFADSYFRVYQIRRLLLQGLPNSPTLTSGSTKFADSYFRVYQIRRLL 113



 Score = 28.3 bits (60), Expect = 3.8
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
 Frame = +2

Query: 302 ERIYRVKG----GLPVGTYIVSDNTAFCPSYTKIYEINKNLRIG 421
           +R+Y+++     GLP    + S +T F  SY ++Y+I + L  G
Sbjct: 42  KRVYQIRRLLLQGLPNSPTLTSGSTKFADSYFRVYQIRRLLLQG 85


>SB_38551| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
          Length = 1357

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 350  VSDNTAFCPSYT-KIYEINKNLRIGQHAFSAYQITVCTSRIS 472
            ++D+   C  YT  IY ++    IG H  SAY   +C+S ++
Sbjct: 1191 LTDDDCNCDGYTTSIYTVSIGC-IGDHGLSAYYTELCSSTLA 1231


>SB_3052| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
          Length = 1124

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 350 VSDNTAFCPSYT-KIYEINKNLRIGQHAFSAYQITVCTSRI 469
           ++D+   C  YT  IY I+    IG H  SAY   +C+S +
Sbjct: 613 LTDDDCNCDGYTTSIYTISIGC-IGDHGLSAYYTELCSSTL 652


>SB_7216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1400

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 326 GLPVGTYIVSDNTAFCPSYTKIYEINKNLRIG 421
           GLP    + S +T F  SY ++Y+I + L  G
Sbjct: 12  GLPNSPTLTSGSTKFADSYFRVYQIRRVLLQG 43


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,861,417
Number of Sequences: 59808
Number of extensions: 301451
Number of successful extensions: 497
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)