BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= an--0614 (505 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore co... 27 5.8 >U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore complex protein protein12 protein. Length = 1847 Score = 27.5 bits (58), Expect = 5.8 Identities = 11/19 (57%), Positives = 17/19 (89%) Frame = +3 Query: 63 KCPLSVNTVLICTSVEFLL 119 KCPL+V+++LI T+VE +L Sbjct: 734 KCPLNVHSMLINTNVELVL 752 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,248,087 Number of Sequences: 27780 Number of extensions: 230540 Number of successful extensions: 485 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 475 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 485 length of database: 12,740,198 effective HSP length: 76 effective length of database: 10,628,918 effective search space used: 967231538 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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