Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0614
         (505 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    23   1.8  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   3.2  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   3.2  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   3.2  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   3.2  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    22   4.2  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   4.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.6  

>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -1

Query: 499 KIKKKNLLSRYP*RAHCYLIRTKRMLSDSQIFIYFINLRVAW-TEGGIVGYNIGTY 335
           +++K+   +RY  R     I     L++ QI I+F N R+ W  E  +   NI  Y
Sbjct: 22  ELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASMNIVPY 77


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -2

Query: 246 KWRYVLNETSQNCPYVFFNLLYM 178
           K+ Y  N  + NC  +++N+ Y+
Sbjct: 97  KYNYNNNNYNNNCKKLYYNINYI 119


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -2

Query: 246 KWRYVLNETSQNCPYVFFNLLYM 178
           K+ Y  N  + NC  +++N+ Y+
Sbjct: 97  KYNYNNNNYNNNCKKLYYNINYI 119


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -2

Query: 246 KWRYVLNETSQNCPYVFFNLLYM 178
           K+ Y  N  + NC  +++N+ Y+
Sbjct: 97  KYNYNNNNYNNNCKKLYYNINYI 119


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -2

Query: 246 KWRYVLNETSQNCPYVFFNLLYM 178
           K+ Y  N  + NC  +++N+ Y+
Sbjct: 97  KYNYNNNNYNNNCKKLYYNINYI 119


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 499 KIKKKNLLSRYP*RAHCYLIRTKRMLSDSQIFIYFINLRVAW 374
           +++K+   +RY  R     I     L++ QI I+F N R+ W
Sbjct: 22  ELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKW 63


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 499 KIKKKNLLSRYP*RAHCYLIRTKRMLSDSQIFIYFINLRVAW 374
           +++K+   +RY  R     I     L++ QI I+F N R+ W
Sbjct: 284 ELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKW 325


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -3

Query: 323 LSHGRYVPAKTRVVTNRVI 267
           ++H RY+P   R++  R +
Sbjct: 804 IAHDRYLPNSLRILLKRFL 822


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,340
Number of Sequences: 438
Number of extensions: 2991
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)