Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0614
         (505 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13130.1 68417.m02045 DC1 domain-containing protein contains ...    27   9.5  
At1g23230.1 68414.m02906 expressed protein                             27   9.5  

>At4g13130.1 68417.m02045 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 767

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 276 PCYMRL*TSTKWRYVLNETSQNC-PYVFFNLLYMCA*CNFL 157
           P ++R+  +T   Y  N+  Q C   ++F  +Y C  CNF+
Sbjct: 459 PHHLRMDKNTGRDYDENKQCQACITPIYFGNIYSCMQCNFI 499


>At1g23230.1 68414.m02906 expressed protein
          Length = 1615

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 260  YKLVQNGDMF*TKHLKIAHMYFLTYY 183
            Y+L++N  M    +L +AH +FL Y+
Sbjct: 1130 YRLIENNAMEQADNLLLAHSHFLAYH 1155


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,165,531
Number of Sequences: 28952
Number of extensions: 198586
Number of successful extensions: 369
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)