Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0613
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    26   3.7  
SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces...    26   3.7  

>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
 Frame = -1

Query: 309 NDFFWH*YNFTSIFAAVTQGSLLCNRYPRSTDS----------VESGAKFRSKIPL*TER 160
           N+ FW+  N  S+F      + L    P+   S          + SG  F     +    
Sbjct: 449 NESFWYLNNIWSVFEYKDPSTKLSALIPKYFFSELNIASICYEISSGLAFLHNSGIAHHN 508

Query: 159 QTTDCVYCEQNSFLRLRNF 103
            TT+C+Y  ++S L++ N+
Sbjct: 509 LTTECIYLTKSSCLKIGNY 527


>SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 342 KYESLFIYYCCR*KTTENFIWIMNALHNMV 431
           +++ LF YY C+ K  E+   ++  LH ++
Sbjct: 148 EFDKLFTYYLCKFKDQEHIYTLIFKLHKLL 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,406,493
Number of Sequences: 5004
Number of extensions: 49734
Number of successful extensions: 93
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)