Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0613
         (603 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33210.1 68417.m04728 F-box family protein (FBL15) contains s...    30   1.4  
At1g45616.1 68414.m05200 leucine-rich repeat family protein cont...    28   4.1  

>At4g33210.1 68417.m04728 F-box family protein (FBL15) contains
           similarity to F-box protein FBL2 GI:6063090 from [Homo
           sapiens]
          Length = 942

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 300 FWH*YNFTSIFAAVTQGSLLCNRYPRSTDSVESGA 196
           FW   NF +I  ++ Q   +C+RYP +T+    GA
Sbjct: 229 FWRVLNFENIRISMEQFENMCSRYPNATEVNVYGA 263


>At1g45616.1 68414.m05200 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to disease resistance
           protein [Lycopersicon esculentum] gi|3894383|gb|AAC78591
          Length = 994

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -2

Query: 116 GCEIL--FNSTVLLVPKLYIISITHNFIL 36
           GC +L  F ++VLL+P L  IS+ HN  L
Sbjct: 239 GCNLLGRFPNSVLLIPNLESISLDHNLNL 267


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,934,468
Number of Sequences: 28952
Number of extensions: 236028
Number of successful extensions: 390
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)