Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0612
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.4  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    23   3.1  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    23   3.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   4.1  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 559 TKHDNVRLTPSLHTHAFLRLYVANLAYCKPI*GSI 455
           T +   R + SL   A  RLY A  + C P+ G++
Sbjct: 52  TLYSGTRSSESLTAQAHHRLYPAFSSSCDPVPGNL 86


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 559 TKHDNVRLTPSLHTHAFLRLYV 494
           TK+DNV +   L+T   L  YV
Sbjct: 26  TKYDNVDIDVVLNTERLLNAYV 47


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 559 TKHDNVRLTPSLHTHAFLRLYV 494
           TK+DNV +   L+T   L  YV
Sbjct: 26  TKYDNVDIDVVLNTERLLNAYV 47


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -1

Query: 411 YTLSKFNMGEIVS*ATIYIHYLPEIFEITY 322
           YTL K N  +IV    I  H L +    TY
Sbjct: 151 YTLDKLNTQDIVPGVRIGAHILDDCDNDTY 180


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,664
Number of Sequences: 438
Number of extensions: 3333
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)