Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0611
         (752 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24568| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_22884| Best HMM Match : Tctex-1 (HMM E-Value=9.4e-26)               28   9.4  

>SB_24568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +3

Query: 555 FVCTVIILY*VYF-CMKCL--PAEKKQSKDVMKKKNVTK*IFKHFLMRIFDNSRLI 713
           F  T+IIL  V   C + L  PAEKKQ  D +KK N++    K    +I +  + I
Sbjct: 98  FRSTIIILQCVCKNCCRVLLPPAEKKQFLDTLKKPNISSLAKKGMKKKIVEKCKKI 153


>SB_22884| Best HMM Match : Tctex-1 (HMM E-Value=9.4e-26)
          Length = 439

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = -3

Query: 480 IVNLYKEALHKSNKNLKKHSFFSYTLSKFNMGEIVS*ATIYIHYLPEIFEI 328
           I  L K+A+   ++ L   +F +YT  +F  G +   AT+Y  Y  E FEI
Sbjct: 132 IGQLGKQAMRIGSRCLWDANFDTYTTYEFKNGSLFGVATVYGVYFDE-FEI 181


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,661,066
Number of Sequences: 59808
Number of extensions: 339268
Number of successful extensions: 559
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)