Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0611
         (752 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.      31   1.2  
AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp ge...    31   1.2  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    29   2.7  
U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical ...    29   4.7  

>AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.
          Length = 1359

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 24/70 (34%), Positives = 33/70 (47%)
 Frame = +3

Query: 144 EYLTELDLAAFDFIGFNCTIHGLVIKFITFHYT**FRKILNLATNRKKVIQT*FVIINNY 323
           E L  LD      I  +C   G  ++ ITF +T    + +     R  V+    VIIN +
Sbjct: 480 ESLDRLDTEGSGGILAHCMGLGKTLQVITFLHTVLMHEKIGEKCKRVLVVVPKNVIINWF 539

Query: 324 KLFQIFLVDN 353
           K FQ +LVDN
Sbjct: 540 KEFQKWLVDN 549


>AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp gene
           related protein 1 protein.
          Length = 1359

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 24/70 (34%), Positives = 33/70 (47%)
 Frame = +3

Query: 144 EYLTELDLAAFDFIGFNCTIHGLVIKFITFHYT**FRKILNLATNRKKVIQT*FVIINNY 323
           E L  LD      I  +C   G  ++ ITF +T    + +     R  V+    VIIN +
Sbjct: 480 ESLDRLDTEGSGGILAHCMGLGKTLQVITFLHTVLMHEKIGEKCKRVLVVVPKNVIINWF 539

Query: 324 KLFQIFLVDN 353
           K FQ +LVDN
Sbjct: 540 KEFQKWLVDN 549


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = -2

Query: 184  IKSKAAKSNSVKYSGKLQKS 125
            +K+KAAK NS++ +G LQKS
Sbjct: 4599 MKAKAAKQNSIEMTGSLQKS 4618


>U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical
           protein T23H2.3 protein.
          Length = 1009

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +2

Query: 5   YRSYPNKVISVSQTGSVANTGPSKSST 85
           Y S PN   S+S+TGS    G SK ST
Sbjct: 63  YTSTPNSKQSISRTGSSTTYGSSKCST 89


>AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical
            protein F52C12.4 protein.
          Length = 1635

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +3

Query: 258  ILNLATNRKKVIQT*FVIINNYKLFQIFLVDNVC 359
            +L  A N+KK+++  F +++  +  +IF +D VC
Sbjct: 960  LLTAAPNKKKILRLAFNVLDRMEKTEIFPLDQVC 993


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,100,772
Number of Sequences: 27780
Number of extensions: 281614
Number of successful extensions: 542
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)