Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0610
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce...    31   0.13 
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    28   0.91 
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    27   1.2  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    27   1.6  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    27   2.1  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    27   2.1  
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc...    27   2.1  
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch...    26   2.8  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    26   2.8  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   2.8  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    26   3.7  
SPAC1805.02c |||electron transfer flavoprotein beta subunit |Sch...    26   3.7  
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    26   3.7  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    25   6.4  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    25   6.4  
SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   6.4  
SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   6.4  
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    25   8.4  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   8.4  

>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 498

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 21/86 (24%), Positives = 39/86 (45%)
 Frame = -2

Query: 481 KILQCCDNNDISKKCSLPPENNETLNSDPLNLCTLVQNCNQLKISSESNEPPTKSTHSDS 302
           K L   D   +  + S PP  N  + +DP  +   V NC   ++  E+N     +   + 
Sbjct: 159 KYLSLLDRALLPWRASSPPTVN--IKNDPFIVDRQVLNCLARQVQEENNHSVAVAQLQEF 216

Query: 301 STKWWRNDIAKLKEKNQAKQSTQNNS 224
           S ++ +N IAK+K+  +  +   N +
Sbjct: 217 SFRFEQNLIAKIKDTVKQFEGMMNQT 242


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 27.9 bits (59), Expect = 0.91
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
 Frame = -2

Query: 400  DPLNLCTLVQNCNQLKISSESNEPPTKSTHSDSSTKWWRNDIAKLKE-----KNQAKQST 236
            DP  L  L +NC  L+   E  E  TK   +   T  ++  +  L E     K + +Q+ 
Sbjct: 1350 DPTQLEELKKNCEALE--KEKQELETKLQETAKETDTFKQQVNSLNEEVENLKKEVEQAN 1407

Query: 235  QNNSCCQQALNPPCD 191
              N+    A N  C+
Sbjct: 1408 TKNTRLAAAWNEKCE 1422


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/64 (21%), Positives = 28/64 (43%)
 Frame = -2

Query: 424 ENNETLNSDPLNLCTLVQNCNQLKISSESNEPPTKSTHSDSSTKWWRNDIAKLKEKNQAK 245
           +NN    ++P      V    +   SSE    P+  T +D S+   + +IA +++     
Sbjct: 574 DNNHANKAEPSQTANNVHEIREPSFSSEHKPQPSLKTTTDVSSPETKQNIADIRKTTLTD 633

Query: 244 QSTQ 233
           Q+ +
Sbjct: 634 QTEE 637


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 454 DISKKCSLPPENNETLNSDPLNLCTLVQNCNQL 356
           D+   CS    ++ T+N +P+NL  L + CN L
Sbjct: 300 DLQSYCSATKASDATINEEPVNL-ALDKACNSL 331


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
 Frame = -2

Query: 376 VQNCNQLKISSESNEPPTKSTHSD---SSTKWWRNDIAKLKEKNQAKQSTQNNSCCQQAL 206
           V++ +Q   ++E+N  PTK  ++D   SS  + ++ +  L    +  +   +     +AL
Sbjct: 433 VRSVSQSSATTETNVKPTKEENADVPVSSPDYLKDLVNALNTSKEQHKGAIDKEKLTEAL 492

Query: 205 NPPCDVTIDELASYFETLVHIPK 137
           N  C V + +     +   +IPK
Sbjct: 493 NISC-VYVPDATDAAKPQYYIPK 514


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +1

Query: 151 PGFRNN*LIHQLLHHKVDSKPADNMNYFGCFVL 249
           PG     L+H +L H V   P  N+ Y  C  +
Sbjct: 201 PGTGKTVLLHNVLDHVVSDYPKVNVCYINCMTI 233


>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = -2

Query: 457 NDISKKCSLPPENNETLNSDPLNLCTLVQNCNQLKI-----SSESNEPPTKSTHSDSSTK 293
           N I+ K   PP++   +NSD + L TLV +  Q+ +     +S S   P K    +++TK
Sbjct: 41  NSIALKFGFPPQDIPLVNSD-VPLSTLVSSGQQILVLKNAATSFSTNEPAKPPIPNAATK 99


>SPBC1289.02c |uap2||U2 snRNP-associated protein
           Uap2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
 Frame = -2

Query: 355 KISSESNEPPTKSTHSDSSTKWWRNDIAKLKEKNQAKQSTQ----NNSCCQQALNPPCDV 188
           K SS   +  TK  +  +S + + +     K K++  +++     N +   Q L  P DV
Sbjct: 64  KESSNGEDRHTKRLYESTSAEGYPSGSRNKKSKSENSEASPAPVINKAVYIQGL--PLDV 121

Query: 187 TIDELASYFETLVHIPKKMSS 125
           T+DE+   F+    I K + +
Sbjct: 122 TVDEIEEVFKKCGVIAKNIDN 142


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 349 SSESNEPPTKSTHSDSSTKWWRNDIAKLKEKNQAKQSTQNN 227
           S ++NE P K  + +++ K  + D   +KEK +     QN+
Sbjct: 525 SKDTNEKPAKDDNKEANEKAEKVDSKDVKEKIEEAADLQNS 565


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 20/79 (25%), Positives = 37/79 (46%)
 Frame = -2

Query: 463 DNNDISKKCSLPPENNETLNSDPLNLCTLVQNCNQLKISSESNEPPTKSTHSDSSTKWWR 284
           +NND+  K     E+N++L     ++ +L +N   LK     +E   +   S    K  R
Sbjct: 659 ENNDLRTKLLKLEESNKSLIKKQEDVDSLEKNIQTLKEDLRKSEEALR--FSKLEAKNLR 716

Query: 283 NDIAKLKEKNQAKQSTQNN 227
             I  LK K++  ++ +N+
Sbjct: 717 EVIDNLKGKHETLEAQRND 735



 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 352 ISSESNEPPTKSTHSDSSTKWWRNDIAKLKEKNQAKQSTQNN 227
           ++S SNE   KS   D   +   N   ++KE+ +  +STQ++
Sbjct: 471 LNSSSNELKEKSALIDKKDQELNNLREQIKEQKKVSESTQSS 512


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -2

Query: 433 LPPENNETLNSDPLNLCTLVQNCNQLKISSESNEPPTKSTHSDS 302
           LPP  N T+N    N+   + + +    +  SN P T ++++ S
Sbjct: 323 LPPRGNPTVNDRVSNVLPSITSFDSSVTTVPSNSPATLNSYTTS 366


>SPAC1805.02c |||electron transfer flavoprotein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 268 LKEKNQAKQSTQNNSCCQQALNPPCDVTIDELASYFETL 152
           LK +  A ++  + S  + ++NP CD+ ++E     ETL
Sbjct: 18  LKPRINATKTAVDLSGQKMSINPFCDIAVEEAIRMKETL 56


>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 16/70 (22%), Positives = 30/70 (42%)
 Frame = +1

Query: 277 YHFATILCYYHYALI*LVVHSTLKISSTGYNFAPMYTNLMGRYSMFHYFLVVDYISLIYR 456
           Y F ++ C+ H+A I       L++      F P Y   + R + +    +   I+L+Y 
Sbjct: 322 YSFTSVKCFVHWAQI--TRRKVLQMYDDSPGFKPSYYTNLNRIARYPIENIRLPITLVYG 379

Query: 457 YYHNIAEFLT 486
              N+ +  T
Sbjct: 380 SNDNMVDIET 389


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -2

Query: 265 KEKNQAKQSTQNNSCCQQALNPPCDVTIDELASYFETLVHIPKKMS 128
           K K   + + Q +SC ++ L  P    +    S +ETL +  K  S
Sbjct: 78  KNKLSKESAIQLSSCIRKTLLAPSSTRVPSKNSSYETLTYSAKDSS 123


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 217 QQALNPPCDVTIDELASYFETLVH 146
           Q + NP    TI+ + S+F+ ++H
Sbjct: 19  QNSKNPSVPYTIETIVSFFQEIIH 42


>SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 242

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 400 RYSMFHYFLVVDYISLIYRYYHNIAEFLTQAL 495
           RY++FH FL   +I L    YHN   +  QAL
Sbjct: 74  RYAIFHIFL--PFI-LTLLLYHNFYNYFDQAL 102


>SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 238

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 400 RYSMFHYFLVVDYISLIYRYYHNIAEFLTQAL 495
           RY++FH FL   +I L    YHN   +  QAL
Sbjct: 74  RYAIFHIFL--PFI-LTLLLYHNFYNYFDQAL 102


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -2

Query: 352 ISSESNEPPTKSTHSDSSTKWWRNDIAKLKE--KNQAKQSTQNNS 224
           I+S SN     S+HS SS+ W     AKL    K+ +K S  +NS
Sbjct: 107 IASFSNSAADVSSHSRSSSSW----SAKLSRFTKHASKPSLSSNS 147


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 334 EPPTKSTHSDSSTKWWRNDIAKLKEKN 254
           E    ST  +S +K+W +D  K  E+N
Sbjct: 369 EKKLDSTFFESFSKFWNSDTPKFSEEN 395


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,999,719
Number of Sequences: 5004
Number of extensions: 41821
Number of successful extensions: 180
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)