Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0610
(500 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0005 + 21442819-21442916,21443053-21443119,21443226-214432... 33 0.13
01_01_0155 - 1362710-1363267 30 0.91
05_05_0145 - 22690212-22690472,22690701-22690818,22691125-226912... 29 2.8
10_08_0640 + 19512591-19512856,19513428-19513550,19513660-195137... 28 3.7
02_04_0454 + 23064081-23064139,23064297-23064366,23064553-230658... 28 3.7
05_04_0349 + 20492334-20492494,20493245-20493324,20493951-204940... 28 4.8
01_06_0787 - 31999632-32000045,32000128-32000214,32000295-320005... 28 4.8
01_05_0264 + 20168409-20168593,20168726-20169055,20170142-201706... 28 4.8
12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751... 27 8.5
12_02_0152 - 14477844-14478085,14478201-14478285 27 8.5
11_01_0424 - 3259192-3259377,3259497-3259727 27 8.5
06_03_0541 - 21944696-21944851,21944939-21945142,21945438-219474... 27 8.5
03_02_0339 - 7623897-7625837 27 8.5
02_02_0415 - 9981345-9981440,9981716-9981784,9982035-9982155,998... 27 8.5
>05_05_0005 +
21442819-21442916,21443053-21443119,21443226-21443291,
21443368-21443414,21443480-21443543,21443627-21443707,
21443781-21443823,21443912-21443961,21444262-21444343,
21445045-21445120,21445451-21445558,21445782-21445833,
21445911-21446570,21446652-21448067
Length = 969
Score = 33.1 bits (72), Expect = 0.13
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = -2
Query: 424 ENNETLNSDPLNLCTLVQNCNQLKISSESNEPPTKSTHS----DSSTKWWRN 281
ENN ++S + L + V N NQ + SSES+ P + ++S D S+ W N
Sbjct: 429 ENNSPVSSSGVKLTSAVSNKNQAEQSSESSRPHSGVSYSSKFGDISSNGWTN 480
>01_01_0155 - 1362710-1363267
Length = 185
Score = 30.3 bits (65), Expect = 0.91
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -2
Query: 469 CCDNNDISKKCSLPPENNETLNSDPLNLCTLV-QNCNQLKISSESNEPPTKSTH 311
CCD + S+ SLPP +D + C ++C QL+ SS S+EPP H
Sbjct: 120 CCDMDICSR--SLPPICR---CADEVESCAAACKDCQQLESSSSSSEPPRYVCH 168
>05_05_0145 -
22690212-22690472,22690701-22690818,22691125-22691261,
22691743-22691844,22691921-22692001,22692325-22692394,
22692628-22692689,22692908-22693320,22693424-22693507,
22694180-22694272,22694376-22694427,22694542-22694608,
22694714-22694772,22694920-22695033,22695174-22695347,
22695444-22695935,22696021-22696090,22696649-22696692
Length = 830
Score = 28.7 bits (61), Expect = 2.8
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = -2
Query: 283 NDIAKLKEKNQAKQSTQNNSCCQQALNPPCDVTIDELASYFE---TLVHIPKKMSSMAEM 113
+D AKL + + ++ NN+ +Q P DV + + S E + V +PK+ S +A +
Sbjct: 751 DDSAKLTDAHDQREEITNNNDEKQVETPKLDVLEESMGSPKEDNKSRVEVPKEDSDLASV 810
Query: 112 MYI 104
+
Sbjct: 811 QVV 813
>10_08_0640 +
19512591-19512856,19513428-19513550,19513660-19513729,
19513846-19513956,19514224-19514307,19515205-19515255,
19515844-19515873,19516002-19516064,19516164-19516229,
19516369-19516485,19516579-19516614,19516938-19517057,
19517188-19517358,19517578-19517688
Length = 472
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -2
Query: 430 PPENNETLNSDPLNLCTLVQNCNQLKISSESNEPPTKST-HSDSSTKWWRNDIAKL 266
PPEN+ V N +L+ + S++PP++S H DS K +R +A +
Sbjct: 353 PPENSAIAPHKEWERSQFVLNHEELQQVNASDQPPSQSPGHVDSGRKLFRIVVADI 408
>02_04_0454 +
23064081-23064139,23064297-23064366,23064553-23065815,
23065946-23066515
Length = 653
Score = 28.3 bits (60), Expect = 3.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 331 PPTKSTHSDSSTKWWRNDIAKL 266
P HS S++ WW +D+A+L
Sbjct: 175 PAALPAHSSSASPWWAHDVAEL 196
>05_04_0349 +
20492334-20492494,20493245-20493324,20493951-20494020,
20494089-20494139,20494535-20494649,20495401-20496268,
20496453-20496628,20500217-20500276,20501617-20501694,
20501951-20502008,20502658-20502720,20503397-20503453,
20503599-20503661,20504081-20504454
Length = 757
Score = 27.9 bits (59), Expect = 4.8
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Frame = -2
Query: 478 ILQCCDNNDISKKC--SLPPENNETLNSDPLNLCTLVQNCNQLKISSESNEPP--TKSTH 311
+L+ CD+ + K +++ LNSD +CTL + QL ++++ + P T
Sbjct: 47 LLRFCDHRNCHKAYHPECVDKDDSFLNSDEQFICTLFCSAIQLMVTAQISRSPRQTMRYR 106
Query: 310 SDSSTKWWRNDIAK 269
+ T W R +K
Sbjct: 107 GNRLTTWVREPPSK 120
>01_06_0787 -
31999632-32000045,32000128-32000214,32000295-32000584,
32000670-32000844,32000930-32001142,32001227-32001328,
32001418-32001822,32001922-32002134,32002312-32002357,
32002602-32002867,32003936-32004012,32004095-32004170,
32004339-32004418,32004945-32005036,32005132-32005171,
32005301-32005400,32005815-32005962,32006071-32006153,
32006207-32006383
Length = 1027
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/61 (22%), Positives = 28/61 (45%)
Frame = -2
Query: 367 CNQLKISSESNEPPTKSTHSDSSTKWWRNDIAKLKEKNQAKQSTQNNSCCQQALNPPCDV 188
C + + S++ +T +D+ + R + AKLK + + + T S +PPC
Sbjct: 430 CLNCGVVATSSDAAAAATAADTREQRLRLEKAKLKAEIERLRGTPGKSAADGIASPPCSA 489
Query: 187 T 185
+
Sbjct: 490 S 490
>01_05_0264 +
20168409-20168593,20168726-20169055,20170142-20170670,
20170825-20170958,20171080-20171252,20171274-20171840,
20172487-20172716,20172954-20172995,20173096-20173224
Length = 772
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 330 GSFDSEDIFNWLQFCTNVHKFNGSLFNVSLFS 425
G DSE NW+ F T +HK G L +++ S
Sbjct: 468 GFIDSESEDNWVWFMTQLHKAIGDLEPLAICS 499
>12_02_1035 -
25570009-25571241,25571940-25573709,25573797-25575118,
25575208-25575555,25576540-25576633
Length = 1588
Score = 27.1 bits (57), Expect = 8.5
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = -2
Query: 379 LVQNCNQLKISS-ESNEPPTKSTHSDSSTKWWRNDIAKLKEKNQAKQSTQNNS 224
L Q +L+I + E N +K ++S +ND+ K++E+N+ K QNNS
Sbjct: 313 LAQAKEKLRILTLEKNGEASKFNDIEASKVRLQNDLDKIREENR-KLEEQNNS 364
>12_02_0152 - 14477844-14478085,14478201-14478285
Length = 108
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -2
Query: 499 LKEPVLKILQCCDNNDISKKCSLPPENNETLNSDPLNLCTLVQ 371
L P+ +CC + S C L + T N DP CTLVQ
Sbjct: 63 LAAPLCLQCRCCSKANPSN-CQLT-SCSSTFNCDPAGKCTLVQ 103
>11_01_0424 - 3259192-3259377,3259497-3259727
Length = 138
Score = 27.1 bits (57), Expect = 8.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 178 HQLLHHKVDSKPADNMNYFG 237
H L HHK D +PA ++ +G
Sbjct: 8 HHLFHHKKDDEPATGVDSYG 27
>06_03_0541 - 21944696-21944851,21944939-21945142,21945438-21947472,
21947644-21947720,21948289-21948477,21949188-21949448,
21949527-21949632,21951330-21951517,21951814-21951971,
21952015-21952840,21952947-21953210
Length = 1487
Score = 27.1 bits (57), Expect = 8.5
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -2
Query: 322 KSTHSDSSTKWWRNDIAKLKEKNQAKQSTQNNSCCQQALNPPCDVTIDELA 170
K HSD T+ N+ + + + ++ Q + +A+NPPC V E A
Sbjct: 1111 KKKHSDEFTR--NNNGTNVPKIPETLETIQEETELAEAVNPPCSVLAVEWA 1159
>03_02_0339 - 7623897-7625837
Length = 646
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = -2
Query: 346 SESNEPPTKSTHSDSSTKWWRNDIAKLKEKNQAKQSTQNNSC----CQQALNP 200
S +NEPP+ S + S + +N + + + A ++T N + C+ L P
Sbjct: 329 SPANEPPSSSEYPGSQQQAGKNQMQSVVQSAMAAKTTANGATVPPGCRHQLTP 381
>02_02_0415 -
9981345-9981440,9981716-9981784,9982035-9982155,
9982441-9982622,9983320-9984921
Length = 689
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 286 RNDIAKLKEKNQAKQSTQNNSCCQQALNPPCDVTIDE 176
R+ K KE++Q + + ++ SC + PPC V I E
Sbjct: 624 RDFFPKWKERHQVRFNFED-SCVTLQMPPPCSVVIQE 659
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,140,875
Number of Sequences: 37544
Number of extensions: 238911
Number of successful extensions: 620
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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