Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0608
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    27   3.9  
SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces...    25   9.0  

>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -1

Query: 120 LLMFELVFTIKNENLVAVRLIIIVNIYKHLFTVL*LFYIF 1
           +L+  +  +I N  LV   + +  N++ H+FT+  LF  F
Sbjct: 7   ILILYISLSIDNNYLVTTLISLKENVFLHIFTLTFLFKAF 46


>SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 333

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +2

Query: 329 YNNIKK-AIFNWLHWLIFCVNYFIR 400
           YN+ +K  +  WL W++ C   F+R
Sbjct: 168 YNSREKWVVIIWLLWVVICYTLFLR 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,355,991
Number of Sequences: 5004
Number of extensions: 37552
Number of successful extensions: 77
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)