Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0607
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    26   5.0  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    26   6.7  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   8.8  

>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -2

Query: 708 TTFSIPYS*IPFIFYRNTI*IR*LCSLMIYSFKVPILIANLRI 580
           T++ +PY  + F FY+N+   + + S +I S K    +ANL I
Sbjct: 149 TSYLVPYDDVRFFFYKNS---KKVISSLIESSKTDDPMANLDI 188


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 972

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = +3

Query: 618  SKSLSCIITLFKLYFYKI*TEFNYTEWKKS*AVVRIILCKCNKVV 752
            ++ L  +   +++Y   +    N TEW  +     +  C CNK V
Sbjct: 875  NEKLKSVAKFWRIYLKILNLRLNGTEWVSAITTKALASCPCNKGV 919


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 86  LVVRFWRRVCTFFIMDSQNVKLEKLSN 6
           L+  FW  V    +++ QNV +E LSN
Sbjct: 523 LLANFWGSVNYGHVLERQNVYIEDLSN 549


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,800,739
Number of Sequences: 5004
Number of extensions: 55950
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)