Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0605
         (462 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1010 - 29653973-29654269                                         27   7.3  
11_06_0368 + 22756988-22758205                                         27   9.7  
09_04_0472 - 17895285-17896459,17897113-17897271,17897374-178977...    27   9.7  

>03_05_1010 - 29653973-29654269
          Length = 98

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +3

Query: 405 ASAHLTESPLPTPLTALTA 461
           A  HL  S LPTPL+AL+A
Sbjct: 34  APVHLRSSRLPTPLSALSA 52


>11_06_0368 + 22756988-22758205
          Length = 405

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 402 MASAHLTESPLPTPLTALTA 461
           +A  HL  S LPTPL AL+A
Sbjct: 77  VAPVHLRSSRLPTPLIALSA 96


>09_04_0472 -
           17895285-17896459,17897113-17897271,17897374-17897794,
           17898520-17898552,17898902-17899384
          Length = 756

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 398 PYGIGAPYGIAAPYTAY 448
           P+GIG   G+ APYT Y
Sbjct: 55  PFGIGEHCGLEAPYTNY 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,555,493
Number of Sequences: 37544
Number of extensions: 73922
Number of successful extensions: 383
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)