Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0605
         (462 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56937| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.7  

>SB_56937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 389 VTAPYGIGAPYGIAAPY 439
           +T PYGI  PY I  PY
Sbjct: 583 ITCPYGITYPYDITCPY 599



 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 389 VTAPYGIGAPYGIAAPYTAYGAYG 460
           +T PY I  PY I  PY     YG
Sbjct: 463 ITCPYDITCPYDIKCPYDITCLYG 486



 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 389 VTAPYGIGAPYGIAAPY 439
           +T PYGI   YGI  PY
Sbjct: 619 ITCPYGITCLYGITCPY 635



 Score = 26.6 bits (56), Expect = 10.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 389 VTAPYGIGAPYGIAAPY 439
           +T PYGI   +GI  PY
Sbjct: 631 ITCPYGITCQFGITCPY 647


>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1448

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 398  PYGIGAPYGIAAPYTAYGAY 457
            PY IG PY   APY     Y
Sbjct: 1342 PYNIGVPYNTGAPYNTGAPY 1361



 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 395  APYGIGAPYGIAAPYTAYGAY 457
            APY  G PY I  PY     Y
Sbjct: 1335 APYNTGEPYNIGVPYNTGAPY 1355



 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 389  VTAPYGIGAPYGIAAPYTAYGAY 457
            +  PY  GAPY   APY+    Y
Sbjct: 1345 IGVPYNTGAPYNTGAPYSTGEPY 1367



 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 398  PYGIGAPYGIAAPYTAYGAY 457
            PY  GAPY   APY+    Y
Sbjct: 1384 PYNTGAPYSTGAPYSTGEPY 1403


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,110,383
Number of Sequences: 59808
Number of extensions: 76754
Number of successful extensions: 556
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)