Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0604
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    29   0.94 
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    28   1.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.9  
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    27   3.8  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    26   5.0  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    26   6.6  
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    26   6.6  

>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
 Frame = +2

Query: 17  LTAEKPSENERSSKIPQIQIYEVRPTDLPEIFSPATMHPPIKSPS--------FSNDREP 172
           + A    E   ++ +P +      P+ +P +F P   HP   +PS        F N   P
Sbjct: 107 IPATNSMETNFNNSLPAVGKTNTFPSQVPNMFGPPLYHPAATAPSEFMPSIPGFGNLPNP 166

Query: 173 TSTGLPFL 196
               +PFL
Sbjct: 167 AMPPIPFL 174


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +2

Query: 65   QIQIYEVRPTDLPEIFSPATMHPPIKSPSFSNDREPTSTGLPFLEDMND 211
            Q+ I E   TD P +FSP      I + S  +  E  S  +PF E+  D
Sbjct: 1396 QVSIDEATQTDFPLVFSPERSSIDINASSMRS--EKASFEIPFPEEQID 1442


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 89   PTDLPEIFSPATMHPPIKSPSFSNDREPTSTGLP 190
            P+ +P +  P+   PP+  PS +    P  +G P
Sbjct: 1088 PSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAP 1121



 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 89   PTDLPEIFSPATMHPPIKSPSFSNDREPTSTGLP 190
            P++ P +  P+   PP+  PS +      S GLP
Sbjct: 1194 PSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLP 1227


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +2

Query: 41  NERSSKIPQIQIYEVRPTDLPEIFSPATMHPPIKSPSFSNDREPTSTGLPFL 196
           NE S+  P + +Y          F P   H P+ S    +  +PT+TGLP L
Sbjct: 252 NEHSA-FPGLDVYHDDSVSAGAAFIP---HNPMDSIDHLDVNDPTATGLPVL 299


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 8/30 (26%), Positives = 21/30 (70%)
 Frame = +3

Query: 333 FRHIIINNWDSIIVWKALNFNKHYIVVKIS 422
           F H++IN +D++   +  + N+ Y++V+++
Sbjct: 178 FSHLMINFFDALTCLRNKSLNEDYLIVQVN 207


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -2

Query: 137 LAGALLPARKFQVSLWASL--RKFVFVVFYSIVRFRLVFLP 21
           L  ALLPAR  +  LWA+L    F F +   I     +F+P
Sbjct: 675 LLDALLPARCIEFLLWAALLVEPFPFELLRLITTSMHLFIP 715


>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 134 PIKSPSFSNDREPTSTGLPFL 196
           P+K P F   R P++T LP L
Sbjct: 52  PVKVPDFVRPRPPSATSLPAL 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,783,832
Number of Sequences: 5004
Number of extensions: 54121
Number of successful extensions: 116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)