Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0604
         (753 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0219 - 28474661-28475146,28475979-28476644                       31   1.3  
11_01_0437 - 3347960-3349246                                           28   9.2  
08_02_0110 + 12650328-12650552,12650827-12651423,12651480-126518...    28   9.2  

>05_07_0219 - 28474661-28475146,28475979-28476644
          Length = 383

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 68  IQIYEVRPTDLPEIFSPATMHPPIKSPSFSNDREPTST 181
           ++ ++  P   P   S  T HPP  SP+ S+ R  T+T
Sbjct: 67  VESFDTAPPPSPPPLSATTPHPPPPSPATSSSRTATAT 104


>11_01_0437 - 3347960-3349246
          Length = 428

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 98  LPEIFSPATMHPPIKSPSFSNDREPTSTGLP 190
           +P++  P+  H P+ SPS  + R P    +P
Sbjct: 160 VPDLSVPSLYHTPLSSPSSKSPRRPQPPPIP 190


>08_02_0110 +
           12650328-12650552,12650827-12651423,12651480-12651857,
           12651997-12652218,12652407-12652483,12652553-12652631,
           12652920-12653105
          Length = 587

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 89  PTDLPEIFSPATMHPPIKSPSFSNDREP 172
           P   P++ SP  + PP+ SP    D  P
Sbjct: 250 PVPEPQVASPPVLEPPVASPQTEKDPMP 277


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,442,423
Number of Sequences: 37544
Number of extensions: 267269
Number of successful extensions: 612
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)