Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0604
         (753 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46147| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.43 
SB_5210| Best HMM Match : Keratin_B2 (HMM E-Value=8)                   31   1.0  
SB_55109| Best HMM Match : fn3 (HMM E-Value=0.017)                     30   1.8  
SB_38861| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-23)                 29   4.1  
SB_29529| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-23)                 29   4.1  
SB_4130| Best HMM Match : Cadherin (HMM E-Value=9.3e-29)               29   4.1  
SB_39586| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_36808| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_20279| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_14979| Best HMM Match : 7tm_1 (HMM E-Value=8.8e-32)                 28   9.4  
SB_4394| Best HMM Match : 7tm_1 (HMM E-Value=1.69978e-42)              28   9.4  
SB_4393| Best HMM Match : 7tm_1 (HMM E-Value=6.40393e-43)              28   9.4  

>SB_46147| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 112 LAGNNAPANKVAQLFKRSRTYINRTTIFGR 201
           ++GNN   NK+A  FK S+++ NR  +  R
Sbjct: 252 VSGNNPTGNKIAHAFKSSKSFANRCKLLSR 281


>SB_5210| Best HMM Match : Keratin_B2 (HMM E-Value=8)
          Length = 139

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +2

Query: 32  PSENERSSKIPQIQIYEVRPTDLPEIFSPATMHPPIKSPSFSNDREPTSTGL 187
           P+    S++   +Q   + P   P     +T H P+++P+ +  + PTST L
Sbjct: 81  PTSTHASTQHQPMQAPNINPCKHPTSTHASTQHQPMQAPNINPCKHPTSTQL 132



 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +2

Query: 32  PSENERSSKIPQIQIYEVRPTDLPEIFSPATMHPPIKSPSFSNDREPTST 181
           P+    S++   +Q   + P   P     +T H P+++P+ +  + PTST
Sbjct: 12  PTSTHASTQHQPMQAPNINPCKHPTSTHASTQHQPMQAPNINPCKHPTST 61



 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +2

Query: 32  PSENERSSKIPQIQIYEVRPTDLPEIFSPATMHPPIKSPSFSNDREPTST 181
           P+    S++   +Q   + P   P     +T H P+++P+ +  + PTST
Sbjct: 35  PTSTHASTQHQPMQAPNINPCKHPTSTHASTQHQPMQAPNINPCKHPTST 84



 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +2

Query: 32  PSENERSSKIPQIQIYEVRPTDLPEIFSPATMHPPIKSPSFSNDREPTST 181
           P+    S++   +Q   + P   P     +T H P+++P+ +  + PTST
Sbjct: 58  PTSTHASTQHQPMQAPNINPCKHPTSTHASTQHQPMQAPNINPCKHPTST 107


>SB_55109| Best HMM Match : fn3 (HMM E-Value=0.017)
          Length = 339

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 112 LAGNNAPANKVAQLFKRSRTYINRTTIFGR 201
           ++GNN   NK+A  FK S  + NR  +  R
Sbjct: 218 VSGNNPTGNKIAHAFKTSTRFANRCKLLSR 247


>SB_38861| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-23)
          Length = 432

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 369 IVWKALNFNKHYIVVKISVYSAILDYCDVCDSCISMWTK*SVI-IQYYCKGNSF 527
           + W A+N  + Y VVK S Y+++          +S+W   SV+ + Y+  G+ F
Sbjct: 56  LAWTAVN--RFYRVVKPSKYNSVFSKRRTAKYIVSVWMLASVLSVPYFAGGDKF 107


>SB_29529| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-23)
          Length = 269

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 369 IVWKALNFNKHYIVVKISVYSAILDYCDVCDSCISMWTK*SVI-IQYYCKGNSF 527
           + W A+N  + Y VVK S Y+++          +S+W   SV+ + Y+  G+ F
Sbjct: 56  LAWTAVN--RFYRVVKPSKYNSVFSKRRTAKYIVSVWMLASVLSVPYFAGGDKF 107


>SB_4130| Best HMM Match : Cadherin (HMM E-Value=9.3e-29)
          Length = 322

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 35  SENERSSKIPQIQIYEVRPTDLPEIFSPATMHPPIKSPSFSNDR 166
           S N R S    ++I+     D+  +FS +T H  +  PS++  R
Sbjct: 80  SGNPRLSAFADVKIHVTDINDIAPVFSASTYHATVYLPSYAGTR 123


>SB_39586| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 102

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 112 LAGNNAPANKVAQLFKRSRTYINR 183
           ++GNN   NK+A  FK S  + NR
Sbjct: 73  VSGNNPTGNKIAHAFKTSMRFANR 96


>SB_36808| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 58  NTTNTNLRSEAHRLT*NFLAGNNAPANKVAQLFKRSRTYINRT 186
           N  +T   S AH L  +F+      ANK+A   ++ + YI RT
Sbjct: 54  NKCHTEKASIAHHLNTHFINVGQDLANKIAHSTQQPKQYIKRT 96


>SB_20279| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1100

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 687 FMYK*VGVVCTLSHFVFYCILA 752
           F+Y+ V  V T+ H +FYC+ A
Sbjct: 435 FVYRMVSAVATVLHCIFYCVQA 456


>SB_14979| Best HMM Match : 7tm_1 (HMM E-Value=8.8e-32)
          Length = 271

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +3

Query: 369 IVWKALNFNKHYIVVKISVYSAILDYCDVCDSCISMWTK*SV-IIQYYCKGNSFF**LMK 545
           + W A+N  + Y VVK S Y+++          +S+W   SV  + Y+  G+ F     K
Sbjct: 118 LAWTAVN--RFYRVVKPSKYNSVFSKRRTAKYIVSVWMLASVSSVPYFAGGDKFIFQPAK 175

Query: 546 RIIYFS 563
            + +F+
Sbjct: 176 FLCFFT 181


>SB_4394| Best HMM Match : 7tm_1 (HMM E-Value=1.69978e-42)
          Length = 331

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +3

Query: 369 IVWKALNFNKHYIVVKISVYSAILDYCDVCDSCISMWTK*SV-IIQYYCKGNSFF**LMK 545
           + W A+N  + Y VVK S Y+++          +S+W   SV  + Y+  G+ F     K
Sbjct: 118 LAWTAVN--RFYRVVKPSKYNSVFSKRRTAKYIVSVWMLASVSSVPYFAGGDKFIFQPAK 175

Query: 546 RIIYFS 563
            + +F+
Sbjct: 176 FLCFFT 181


>SB_4393| Best HMM Match : 7tm_1 (HMM E-Value=6.40393e-43)
          Length = 521

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +3

Query: 369 IVWKALNFNKHYIVVKISVYSAILDYCDVCDSCISMWTK*SV-IIQYYCKGNSFF**LMK 545
           + W A+N  + Y VVK S Y+++          +S+W   SV  + Y+  G+ F     K
Sbjct: 118 LAWTAVN--RFYRVVKPSKYNSVFSKRRTAKYIVSVWMLASVSSVPYFAGGDKFIFQPAK 175

Query: 546 RIIYFS 563
            + +F+
Sbjct: 176 FLCFFT 181


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,953,106
Number of Sequences: 59808
Number of extensions: 340085
Number of successful extensions: 874
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)