Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0604
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   1.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.1  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    23   3.1  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   5.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.4  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    21   9.4  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    21   9.4  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 479 PH*YTAIAYITVI*NSTIYTYFNYNVMFVKIQS 381
           P  Y  I ++ +I   T+Y +FN  V  V I S
Sbjct: 215 PEPYIDITFVVIIRRRTLYYFFNLIVPCVLIAS 247


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +2

Query: 29  KPSENERSSKIPQIQIYEVRPTDLPEIFSPATMHPPIKSPSFSNDREPTSTGLP 190
           K SE+   S IP++ +     +  P  F  + + P   S   S  R P    LP
Sbjct: 357 KSSESSTGSSIPKLNLSTALMSQPPPNFGVSQVSPVSMSALVSAVRSPAGGQLP 410


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 73  NLRSEAHRLT*NFLAGNNAPANKVAQL 153
           N+R EA RL  NFL+  N     +A L
Sbjct: 525 NMRLEAIRLDGNFLSDINGVFTSIASL 551


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 113 RKFQVSLWASLRKFVFVVFYSIVRFR 36
           + F  + +  +  F+F+ F S+VRFR
Sbjct: 9   KNFPSTSFILINYFIFLYFNSLVRFR 34


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = +3

Query: 369 IVWKALNFNKHYIVVKISVYSAILDYCDVCDSCISMWTK*SVIIQYY 509
           IV  A+     YI+ +    SA+ DYC++  + +      S+++ ++
Sbjct: 336 IVLGAIGSIVFYIISRYVFRSALEDYCNIVATHLVCGILGSILVPFF 382


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 170 PTSTGLPFLEDMNDI 214
           PT TGLPF+   N I
Sbjct: 929 PTETGLPFVYTFNVI 943


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2

Query: 467 YINVDQIISNNSILLQR*QFFLIA 538
           Y+N+D+I++N+ +  Q    F+ A
Sbjct: 29  YVNIDEILANDRLRNQYYDCFIDA 52


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2

Query: 467 YINVDQIISNNSILLQR*QFFLIA 538
           Y+N+D+I++N+ +  Q    F+ A
Sbjct: 29  YVNIDEILANDRLRNQYYDCFIDA 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,403
Number of Sequences: 438
Number of extensions: 3705
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)