Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0604
         (753 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35210.2 68418.m04175 peptidase M50 family protein / sterol-r...    29   3.3  
At5g35210.1 68418.m04174 peptidase M50 family protein / sterol-r...    29   3.3  
At1g54970.1 68414.m06278 proline-rich family protein similar to ...    29   3.3  

>At5g35210.2 68418.m04175 peptidase M50 family protein /
           sterol-regulatory element binding protein (SREBP) site 2
           protease family protein contains PFam PF02163:
           sterol-regulatory element binding protein (SREBP) site 2
           protease
          Length = 1409

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 330 NFRHIIINNWDSIIVWKALNFNKHYIVVKISVYSAILDYCDVCDSCISMW 479
           N R  I  N D+++ +  +N     ++V IS  S  L+Y ++C +    W
Sbjct: 513 NHRLNISVNGDAVVKYYNVNDISKVVLVLISASSHTLEYVEICKAITQYW 562


>At5g35210.1 68418.m04174 peptidase M50 family protein /
           sterol-regulatory element binding protein (SREBP) site 2
           protease family protein contains PFam PF02163:
           sterol-regulatory element binding protein (SREBP) site 2
           protease
          Length = 1576

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 330 NFRHIIINNWDSIIVWKALNFNKHYIVVKISVYSAILDYCDVCDSCISMW 479
           N R  I  N D+++ +  +N     ++V IS  S  L+Y ++C +    W
Sbjct: 513 NHRLNISVNGDAVVKYYNVNDISKVVLVLISASSHTLEYVEICKAITQYW 562


>At1g54970.1 68414.m06278 proline-rich family protein similar to
           proline-rich protein GI:170048 from [Glycine max]
          Length = 335

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +2

Query: 20  TAEKPSENERSSKIPQIQIYEVRPTDLPEIFSPATMHPPI--KSPSFS 157
           T  KP+ +   +  P +     +PT  P +++  T+ PP+  KSPS+S
Sbjct: 141 TVYKPTLSPPVNNKPSLSPPVYKPTLSPPVYTKPTLPPPVYKKSPSYS 188


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,511,392
Number of Sequences: 28952
Number of extensions: 246311
Number of successful extensions: 517
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)