Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0603
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    28   1.8  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    27   2.3  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    27   3.1  
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||...    26   7.1  

>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -1

Query: 528 KPIKGFQASKSFLKTKNKNEI 466
           KP K   ASKS LK K KNE+
Sbjct: 13  KPFKSKHASKSSLKEKYKNEV 33


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 512 KPFIGLSDTFETLHESNLKI*NLEKDI*KTSEVSRE-TRMERSSFRLTSE 658
           KP +G + T E L   +  I NL+  +  T EV+ E T  +    +LT++
Sbjct: 826 KPLLGTTQTDEYLRRKDALINNLQNQLESTKEVANELTITKERVLQLTND 875


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -2

Query: 668 LQFLH*LIERNFVPSGSPLTPLKFFIYLFL 579
           ++ LH    RN V +G  ++P +FF+Y+F+
Sbjct: 241 IKTLHRKDLRNAVANGWRISPFRFFLYVFI 270


>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 287 ACR*GRCSFFFLLLRCVDELTAH 219
           A R G+C  F+   +C DEL  H
Sbjct: 34  ALRCGQCEKFYACFQCHDELNTH 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,051,310
Number of Sequences: 5004
Number of extensions: 60503
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)