Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0603
         (792 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    27   0.20 
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    25   0.61 
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   4.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.9  

>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -1

Query: 165 HTLRYSSKVSV*SQRLPHPSNRNALLLHGRNRRSGGTYPCGLTRGP 28
           H + Y    +  +QRLP   +R  ++L    +R GG  P G T GP
Sbjct: 363 HNVVYRPGENPVTQRLPAVLSRIGIILASPLKREGGP-PTGATTGP 407


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 25.4 bits (53), Expect = 0.61
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -2

Query: 560 CSRVKSQKYRLNQ*KAFRHRNHS--*KQKTKMKYIREQSQ 447
           C RV S    L   K+  HR HS   +Q+ +M+ +RE+ +
Sbjct: 38  CKRVYSSLNSLRNHKSIYHRQHSKNEQQRKEMEQMRERER 77


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 693 NYGIMKKKKQYYELNY 740
           NY     KK YY +NY
Sbjct: 317 NYNNYNNKKLYYNINY 332


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 35  EVLPPVKLVVP 3
           E++PP  LVVP
Sbjct: 295 EIIPPTSLVVP 305


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 35  EVLPPVKLVVP 3
           E++PP  LVVP
Sbjct: 295 EIIPPTSLVVP 305


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 35  EVLPPVKLVVP 3
           E++PP  LVVP
Sbjct: 291 EIIPPTSLVVP 301


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,257
Number of Sequences: 438
Number of extensions: 4674
Number of successful extensions: 23
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)