Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0601
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    27   2.6  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    27   3.4  
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    27   3.4  
SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|c...    26   4.5  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    25   7.9  

>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 453 VLRIQHNPSRLLEYHPAKKCLTRRVLGRVYTKSS 352
           +++   NP+ ++E+  +   L++RVLG   TK S
Sbjct: 575 IIKQSDNPTCIVEFFHSTNRLSKRVLGEFLTKGS 608


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 698 ITTENTSANISSLQSRQLCLEKFGSYIKYHNKKL 597
           I   + S+ +S+L   + C ++FG Y K + KK+
Sbjct: 289 ICNSDASSVVSNLSDFEDCFDQFGVYDKEYEKKI 322


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 426 SKGYAGFAERVREPTGSNQRKF 491
           +KG  G A +VR+P G  ++KF
Sbjct: 331 NKGVTGVASQVRKPVGKLEKKF 352


>SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 169

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -1

Query: 689 ENTSANISSLQSRQLCLEKFGSYIKYHNKKLIQ 591
           E+ ++ ISS+ S++  LE+F +  +   K L+Q
Sbjct: 88  ESVNSKISSISSQEYALEEFQALSQNFEKNLVQ 120


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 317 IRMHRTSYPLGHDDFVYTRPSTLRVRHFLAGWYSSNLEGL 436
           +R  R++    +DD V+  P+T  V   +  WY S+LE L
Sbjct: 348 LRRSRSNPAFANDDTVH--PNTSFVSSNINNWYGSDLEEL 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,016,046
Number of Sequences: 5004
Number of extensions: 64006
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)