BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= an--0601 (701 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 27 2.6 SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 27 3.4 SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 27 3.4 SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|c... 26 4.5 SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 25 7.9 >SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces pombe|chr 2|||Manual Length = 1462 Score = 27.1 bits (57), Expect = 2.6 Identities = 11/34 (32%), Positives = 21/34 (61%) Frame = -3 Query: 453 VLRIQHNPSRLLEYHPAKKCLTRRVLGRVYTKSS 352 +++ NP+ ++E+ + L++RVLG TK S Sbjct: 575 IIKQSDNPTCIVEFFHSTNRLSKRVLGEFLTKGS 608 >SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces pombe|chr 1|||Manual Length = 1028 Score = 26.6 bits (56), Expect = 3.4 Identities = 11/34 (32%), Positives = 20/34 (58%) Frame = -1 Query: 698 ITTENTSANISSLQSRQLCLEKFGSYIKYHNKKL 597 I + S+ +S+L + C ++FG Y K + KK+ Sbjct: 289 ICNSDASSVVSNLSDFEDCFDQFGVYDKEYEKKI 322 >SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr 2|||Manual Length = 432 Score = 26.6 bits (56), Expect = 3.4 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = +3 Query: 426 SKGYAGFAERVREPTGSNQRKF 491 +KG G A +VR+P G ++KF Sbjct: 331 NKGVTGVASQVRKPVGKLEKKF 352 >SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 169 Score = 26.2 bits (55), Expect = 4.5 Identities = 11/33 (33%), Positives = 21/33 (63%) Frame = -1 Query: 689 ENTSANISSLQSRQLCLEKFGSYIKYHNKKLIQ 591 E+ ++ ISS+ S++ LE+F + + K L+Q Sbjct: 88 ESVNSKISSISSQEYALEEFQALSQNFEKNLVQ 120 >SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||Manual Length = 601 Score = 25.4 bits (53), Expect = 7.9 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = +2 Query: 317 IRMHRTSYPLGHDDFVYTRPSTLRVRHFLAGWYSSNLEGL 436 +R R++ +DD V+ P+T V + WY S+LE L Sbjct: 348 LRRSRSNPAFANDDTVH--PNTSFVSSNINNWYGSDLEEL 385 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,016,046 Number of Sequences: 5004 Number of extensions: 64006 Number of successful extensions: 137 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 136 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 137 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 325165428 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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