Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0601
         (701 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59447| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_51163| Best HMM Match : Adeno_PIX (HMM E-Value=0.96)                29   3.6  
SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_55813| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_29808| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_59447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1094

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 377 SVGYTRSRRGLKDKTSGAFVCSDAPVFKSRRWVPIFLMKYVLNRCS 240
           S GY  +R+ LK+K    +V S+A + K+  W  +      LN+ S
Sbjct: 213 SQGYEEARKILKEKYGDPYVISNAYILKATEWPSVSYDPKSLNKFS 258


>SB_51163| Best HMM Match : Adeno_PIX (HMM E-Value=0.96)
          Length = 772

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 400 KVSNAQSTRSGIHEVVVA*RIRRPVHSYVVMHRFLNPADG 281
           KV+  Q+ R   HEVV A   R+ V   + +H+F + ++G
Sbjct: 687 KVATEQAIRDLQHEVVKAASKRKGVRKLIFVHKFTDSSEG 726


>SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2529

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +2

Query: 308 HHYIRMHRTSYPLGHDDFVYTRP--STLRVRHFLAGWYSSN 424
           HH ++MH   +  G  + VY +P   TL+ + +++G   +N
Sbjct: 64  HHRLKMHYRDFKFGVKNIVYDKPVIQTLKPQSYISGSERNN 104


>SB_55813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 193

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +2

Query: 308 HHYIRMHRTSYPLGHDDFVYTRP--STLRVRHFLAGWYSSN 424
           HH ++MH   +  G  + VY +P   TL+ + +++G   +N
Sbjct: 64  HHRLKMHYRDFKFGVKNIVYGKPVIQTLKPQSYISGSERNN 104


>SB_29808| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 543

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +3

Query: 471 GSNQRKFV*CATFIFVIKSAFYLVSASTV-RLQLSLLHSNRLNKFFV 608
           G+++ KF+    F+ VIK  FY ++   + ++  SL +SN L++  V
Sbjct: 147 GTSEVKFLAKGLFVEVIKEMFYDIAEELMEKVHASLAYSNELSETIV 193


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,977,449
Number of Sequences: 59808
Number of extensions: 462885
Number of successful extensions: 881
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)