Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0601
         (701 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50250.1 68416.m05495 hypothetical protein predicted protein,...    28   5.2  
At2g05970.1 68415.m00648 F-box family protein contains F-box dom...    28   6.9  
At1g63150.1 68414.m07137 pentatricopeptide (PPR) repeat-containi...    28   6.9  
At1g11800.1 68414.m01354 endonuclease/exonuclease/phosphatase fa...    27   9.1  

>At3g50250.1 68416.m05495 hypothetical protein predicted protein,
           Arabidopsis thaliana
          Length = 148

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -1

Query: 362 RSRRGLKDKTSGAFVCSDAPVFKSRRWVPIFLMKYVLNRCS 240
           R RR L     G      A VF+ RRW+P  ++  V+   S
Sbjct: 36  RRRRWLSGDGDGGCPAVAAAVFRQRRWLPAMVVMVVIPAAS 76


>At2g05970.1 68415.m00648 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 377

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -1

Query: 380 YSVGYTRSRRGLKDKTSGAFVCSDAPVFKSRRWV-PIFLMKYVLNRCSRLTS 228
           Y   Y  +R  +   TSG  +   + V KS+RW+  I+ M Y+  R  R+ S
Sbjct: 246 YVKEYIDTRLNIALTTSGELLKVASVVQKSKRWLFRIYKMNYIKRRWERIES 297


>At1g63150.1 68414.m07137 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 629

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +3

Query: 501 ATFIFVIKSAFYLVSASTVRLQLSLLHSNRLNKFFV 608
           A  I  ++S+ ++  AST+ L  ++LH  RL+K F+
Sbjct: 590 AELIKEMRSSGFVGDASTISLVTNMLHDGRLDKSFL 625


>At1g11800.1 68414.m01354 endonuclease/exonuclease/phosphatase
           family protein contains Pfam profile PF03372:
           Endonuclease/Exonuclease/phosphatase family
          Length = 441

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 372 DRVLCALDTFWLGGILVTSK 431
           DR+LC LD + LGGI +  K
Sbjct: 382 DRILCRLDDYKLGGIEMVGK 401


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,333,763
Number of Sequences: 28952
Number of extensions: 321532
Number of successful extensions: 658
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)