Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0600
         (380 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch...    24   7.0  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    24   9.3  

>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 257

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 374 FNSNHFFP*LVCDYHLQYGSFQYYL 300
           F  N++F   + +YH  + +F +YL
Sbjct: 10  FELNNYFGFYLFNYHFDFSNFGFYL 34


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 293  RLSNNIGRIHIADD 334
            +LS N+GR+HIA D
Sbjct: 996  QLSYNLGRLHIAGD 1009


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,176,905
Number of Sequences: 5004
Number of extensions: 18333
Number of successful extensions: 27
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)