BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= an--0600 (380 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch... 24 7.0 SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 24 9.3 >SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr mitochondrial|||Manual Length = 257 Score = 24.2 bits (50), Expect = 7.0 Identities = 8/25 (32%), Positives = 15/25 (60%) Frame = -1 Query: 374 FNSNHFFP*LVCDYHLQYGSFQYYL 300 F N++F + +YH + +F +YL Sbjct: 10 FELNNYFGFYLFNYHFDFSNFGFYL 34 >SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1273 Score = 23.8 bits (49), Expect = 9.3 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +2 Query: 293 RLSNNIGRIHIADD 334 +LS N+GR+HIA D Sbjct: 996 QLSYNLGRLHIAGD 1009 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,176,905 Number of Sequences: 5004 Number of extensions: 18333 Number of successful extensions: 27 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 27 length of database: 2,362,478 effective HSP length: 65 effective length of database: 2,037,218 effective search space used: 124270298 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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