Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0600
         (380 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    27   6.0  
AF039053-15|AAW88408.1|  279|Caenorhabditis elegans Serpentine r...    27   6.0  

>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = -3

Query: 288 MQIINHIFSLNVSAKFSASS 229
           MQ+++HIF+LNV A  +++S
Sbjct: 856 MQVVSHIFTLNVVADSTSTS 875


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = -3

Query: 288 MQIINHIFSLNVSAKFSASS 229
           MQ+++HIF+LNV A  +++S
Sbjct: 856 MQVVSHIFTLNVVADSTSTS 875


>AF039053-15|AAW88408.1|  279|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 17 protein.
          Length = 279

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 21  IGLFIDIKLKATIITA*YYMLILVTFH 101
           I  F+D+ L A+++    ++LIL TFH
Sbjct: 43  IRFFLDVVLGASVVAHLGFVLILATFH 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,270,155
Number of Sequences: 27780
Number of extensions: 97216
Number of successful extensions: 180
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)