Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0599
(596 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 98 1e-21
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 34 0.018
SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ... 34 0.018
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 31 0.097
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 29 0.52
SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces... 28 0.90
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 27 1.6
SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit |Schi... 27 2.7
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 27 2.7
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 27 2.7
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 26 3.6
SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch... 26 4.8
>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 404
Score = 97.9 bits (233), Expect = 1e-21
Identities = 38/70 (54%), Positives = 52/70 (74%)
Frame = +2
Query: 185 YKTELCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCH 364
YKTE C+ ++ +G C+YG KCQFAHG +EL+ RHPKYK+E CR+F G+CPYG RC
Sbjct: 327 YKTEPCKNWQISGTCRYGSKCQFAHGNQELKEPPRHPKYKSERCRSFMMYGYCPYGLRCC 386
Query: 365 FVHNAEEARR 394
F+H+ A++
Sbjct: 387 FLHDESNAQK 396
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 33.9 bits (74), Expect = 0.018
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 299 YKTELCRTFHSVGFCPYGPRCHFVHNAEE 385
Y+ ++C+ + G+C YG C F+H E+
Sbjct: 185 YQPDVCKDYKLTGYCGYGDTCKFLHMRED 213
Score = 33.9 bits (74), Expect = 0.018
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 185 YKTELCRPFEEAGVCKYGDKCQFAH 259
Y+ ++C+ ++ G C YGD C+F H
Sbjct: 185 YQPDVCKDYKLTGYCGYGDTCKFLH 209
>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 170
Score = 33.9 bits (74), Expect = 0.018
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVH 373
C + E G C G++C + H P + +C ++++GFCP GP C H
Sbjct: 82 CHFYAERGWCSNGEECLYLH---------LDPSKQVGVC-AWYNMGFCPLGPICRGKH 129
Score = 31.9 bits (69), Expect = 0.073
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 221 GVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVH 373
G+CK G++C F H NL++ P C + G+C G C ++H
Sbjct: 60 GLCKKGEQCDFLHEY----NLKKMPP-----CHFYAERGWCSNGEECLYLH 101
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 31.5 bits (68), Expect = 0.097
Identities = 17/58 (29%), Positives = 24/58 (41%)
Frame = +2
Query: 197 LCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFV 370
LC C Y + C+F H V E + P + C F G CP G +C ++
Sbjct: 47 LCPAISIGNECPYKENCKFPHDV-EAYLATKAPDI-GDKCPIFERYGVCPAGFKCRWL 102
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/31 (35%), Positives = 12/31 (38%)
Frame = +2
Query: 290 HPKYKTELCRTFHSVGFCPYGPRCHFVHNAE 382
H K LC CPY C F H+ E
Sbjct: 40 HVKENNALCPAISIGNECPYKENCKFPHDVE 70
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 29.1 bits (62), Expect = 0.52
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVH 373
C+ F G C G+ C F+H + R +C+ F G C +GP+C H
Sbjct: 47 CKFFRN-GTCTAGENCPFSHSLETER----------PICKYFLK-GNCKFGPKCALSH 92
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 257 HGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVHNAEEAR 391
+GV ++NLQ P C+ F + G C G C F H+ E R
Sbjct: 34 NGVSTVKNLQHVP------CKFFRN-GTCTAGENCPFSHSLETER 71
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 197 LCRPFEEAGVCKYGDKCQFAHGVRELRNL 283
+C+ F + G CK+G KC +H + NL
Sbjct: 73 ICKYFLK-GNCKFGPKCALSHALPGNTNL 100
>SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 303
Score = 28.3 bits (60), Expect = 0.90
Identities = 15/66 (22%), Positives = 30/66 (45%)
Frame = +3
Query: 252 LLTASANYAIFSVILNTRRSCVALSIRLASVLMDRVAISCITQRKQDAENHRRQEVHWHR 431
LL + + I ++ SC L I++ V+ + S + R + ++ + +W R
Sbjct: 213 LLQINKSLTIDGTNISANLSCTHLVIQIPKVIQATLVCSSESTRVVKSRIYQYSDENWKR 272
Query: 432 SHRADL 449
HR +L
Sbjct: 273 DHRLEL 278
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 27.5 bits (58), Expect = 1.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 450 IDPPDESDANEPPGDDGSLRLASS 379
+D +E+D N PP D+G + L S
Sbjct: 14 VDTEEENDKNPPPLDEGDIELLKS 37
>SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +1
Query: 427 IALIGRIYGVVYERRVAIATLAAFSIDALLFTCDVATSTSHSFR 558
I + GR++ + + T+A FS D+ CDV F+
Sbjct: 33 IQITGRLFHRIVNGKQDFTTVALFSADSSTMNCDVCRLIEPEFK 76
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 237 GINANLLTASANYAIFSVILNTRRSCVALSIRLAS 341
G N N + AS+N A+ + + R CV + ++L +
Sbjct: 357 GFNPNEVDASSNTALHTAVRYNRPECVKMLLKLGA 391
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 26.6 bits (56), Expect = 2.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 314 CRTFHSVGFCPYGPRCHFVH 373
CR +++ G C G C FVH
Sbjct: 209 CRYYNANGICGKGAACRFVH 228
Score = 25.0 bits (52), Expect = 8.4
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAH 259
CR + G+C G C+F H
Sbjct: 209 CRYYNANGICGKGAACRFVH 228
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 197 LCRPFEEAGVCKYGDKCQFAHGVRELRNLQ 286
+C+ F++ G CK+G KC H + + R ++
Sbjct: 69 ICKYFQK-GNCKFGSKCALEHVLPDGRKVK 97
>SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 384
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 221 PLLQTVGRARSCSDLWLVAEEPVH 150
PL +T+G A S + +WL+ EE ++
Sbjct: 103 PLFKTMGTADSQNRMWLLPEETLY 126
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,241,422
Number of Sequences: 5004
Number of extensions: 40274
Number of successful extensions: 180
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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