BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= an--0599 (596 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 98 1e-21 SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 34 0.018 SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ... 34 0.018 SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 31 0.097 SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 29 0.52 SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces... 28 0.90 SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 27 1.6 SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit |Schi... 27 2.7 SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 27 2.7 SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 27 2.7 SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 26 3.6 SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch... 26 4.8 >SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 404 Score = 97.9 bits (233), Expect = 1e-21 Identities = 38/70 (54%), Positives = 52/70 (74%) Frame = +2 Query: 185 YKTELCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCH 364 YKTE C+ ++ +G C+YG KCQFAHG +EL+ RHPKYK+E CR+F G+CPYG RC Sbjct: 327 YKTEPCKNWQISGTCRYGSKCQFAHGNQELKEPPRHPKYKSERCRSFMMYGYCPYGLRCC 386 Query: 365 FVHNAEEARR 394 F+H+ A++ Sbjct: 387 FLHDESNAQK 396 >SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosaccharomyces pombe|chr 2|||Manual Length = 533 Score = 33.9 bits (74), Expect = 0.018 Identities = 10/29 (34%), Positives = 18/29 (62%) Frame = +2 Query: 299 YKTELCRTFHSVGFCPYGPRCHFVHNAEE 385 Y+ ++C+ + G+C YG C F+H E+ Sbjct: 185 YQPDVCKDYKLTGYCGYGDTCKFLHMRED 213 Score = 33.9 bits (74), Expect = 0.018 Identities = 10/25 (40%), Positives = 17/25 (68%) Frame = +2 Query: 185 YKTELCRPFEEAGVCKYGDKCQFAH 259 Y+ ++C+ ++ G C YGD C+F H Sbjct: 185 YQPDVCKDYKLTGYCGYGDTCKFLH 209 >SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces pombe|chr 1|||Manual Length = 170 Score = 33.9 bits (74), Expect = 0.018 Identities = 17/58 (29%), Positives = 27/58 (46%) Frame = +2 Query: 200 CRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVH 373 C + E G C G++C + H P + +C ++++GFCP GP C H Sbjct: 82 CHFYAERGWCSNGEECLYLH---------LDPSKQVGVC-AWYNMGFCPLGPICRGKH 129 Score = 31.9 bits (69), Expect = 0.073 Identities = 16/51 (31%), Positives = 25/51 (49%) Frame = +2 Query: 221 GVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVH 373 G+CK G++C F H NL++ P C + G+C G C ++H Sbjct: 60 GLCKKGEQCDFLHEY----NLKKMPP-----CHFYAERGWCSNGEECLYLH 101 >SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 617 Score = 31.5 bits (68), Expect = 0.097 Identities = 17/58 (29%), Positives = 24/58 (41%) Frame = +2 Query: 197 LCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFV 370 LC C Y + C+F H V E + P + C F G CP G +C ++ Sbjct: 47 LCPAISIGNECPYKENCKFPHDV-EAYLATKAPDI-GDKCPIFERYGVCPAGFKCRWL 102 Score = 26.6 bits (56), Expect = 2.7 Identities = 11/31 (35%), Positives = 12/31 (38%) Frame = +2 Query: 290 HPKYKTELCRTFHSVGFCPYGPRCHFVHNAE 382 H K LC CPY C F H+ E Sbjct: 40 HVKENNALCPAISIGNECPYKENCKFPHDVE 70 >SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 547 Score = 29.1 bits (62), Expect = 0.52 Identities = 17/58 (29%), Positives = 25/58 (43%) Frame = +2 Query: 200 CRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVH 373 C+ F G C G+ C F+H + R +C+ F G C +GP+C H Sbjct: 47 CKFFRN-GTCTAGENCPFSHSLETER----------PICKYFLK-GNCKFGPKCALSH 92 Score = 27.1 bits (57), Expect = 2.1 Identities = 16/45 (35%), Positives = 22/45 (48%) Frame = +2 Query: 257 HGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVHNAEEAR 391 +GV ++NLQ P C+ F + G C G C F H+ E R Sbjct: 34 NGVSTVKNLQHVP------CKFFRN-GTCTAGENCPFSHSLETER 71 Score = 25.4 bits (53), Expect = 6.3 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = +2 Query: 197 LCRPFEEAGVCKYGDKCQFAHGVRELRNL 283 +C+ F + G CK+G KC +H + NL Sbjct: 73 ICKYFLK-GNCKFGPKCALSHALPGNTNL 100 >SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 303 Score = 28.3 bits (60), Expect = 0.90 Identities = 15/66 (22%), Positives = 30/66 (45%) Frame = +3 Query: 252 LLTASANYAIFSVILNTRRSCVALSIRLASVLMDRVAISCITQRKQDAENHRRQEVHWHR 431 LL + + I ++ SC L I++ V+ + S + R + ++ + +W R Sbjct: 213 LLQINKSLTIDGTNISANLSCTHLVIQIPKVIQATLVCSSESTRVVKSRIYQYSDENWKR 272 Query: 432 SHRADL 449 HR +L Sbjct: 273 DHRLEL 278 >SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schizosaccharomyces pombe|chr 2|||Manual Length = 438 Score = 27.5 bits (58), Expect = 1.6 Identities = 10/24 (41%), Positives = 15/24 (62%) Frame = -3 Query: 450 IDPPDESDANEPPGDDGSLRLASS 379 +D +E+D N PP D+G + L S Sbjct: 14 VDTEEENDKNPPPLDEGDIELLKS 37 >SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit |Schizosaccharomyces pombe|chr 1|||Manual Length = 309 Score = 26.6 bits (56), Expect = 2.7 Identities = 12/44 (27%), Positives = 20/44 (45%) Frame = +1 Query: 427 IALIGRIYGVVYERRVAIATLAAFSIDALLFTCDVATSTSHSFR 558 I + GR++ + + T+A FS D+ CDV F+ Sbjct: 33 IQITGRLFHRIVNGKQDFTTVALFSADSSTMNCDVCRLIEPEFK 76 >SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase Gde1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1076 Score = 26.6 bits (56), Expect = 2.7 Identities = 11/35 (31%), Positives = 20/35 (57%) Frame = +3 Query: 237 GINANLLTASANYAIFSVILNTRRSCVALSIRLAS 341 G N N + AS+N A+ + + R CV + ++L + Sbjct: 357 GFNPNEVDASSNTALHTAVRYNRPECVKMLLKLGA 391 >SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 377 Score = 26.6 bits (56), Expect = 2.7 Identities = 9/20 (45%), Positives = 12/20 (60%) Frame = +2 Query: 314 CRTFHSVGFCPYGPRCHFVH 373 CR +++ G C G C FVH Sbjct: 209 CRYYNANGICGKGAACRFVH 228 Score = 25.0 bits (52), Expect = 8.4 Identities = 8/20 (40%), Positives = 11/20 (55%) Frame = +2 Query: 200 CRPFEEAGVCKYGDKCQFAH 259 CR + G+C G C+F H Sbjct: 209 CRYYNANGICGKGAACRFVH 228 >SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharomyces pombe|chr 1|||Manual Length = 583 Score = 26.2 bits (55), Expect = 3.6 Identities = 10/30 (33%), Positives = 19/30 (63%) Frame = +2 Query: 197 LCRPFEEAGVCKYGDKCQFAHGVRELRNLQ 286 +C+ F++ G CK+G KC H + + R ++ Sbjct: 69 ICKYFQK-GNCKFGSKCALEHVLPDGRKVK 97 >SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Schizosaccharomyces pombe|chr 3|||Manual Length = 384 Score = 25.8 bits (54), Expect = 4.8 Identities = 10/24 (41%), Positives = 17/24 (70%) Frame = -1 Query: 221 PLLQTVGRARSCSDLWLVAEEPVH 150 PL +T+G A S + +WL+ EE ++ Sbjct: 103 PLFKTMGTADSQNRMWLLPEETLY 126 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,241,422 Number of Sequences: 5004 Number of extensions: 40274 Number of successful extensions: 180 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 156 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 174 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 260219058 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -