Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0599
(596 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45794| Best HMM Match : zf-CCCH (HMM E-Value=3.1e-27) 148 4e-36
SB_34807| Best HMM Match : zf-CCCH (HMM E-Value=4.6e-07) 38 0.006
SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09) 36 0.019
SB_282| Best HMM Match : zf-CCCH (HMM E-Value=2.4e-10) 32 0.40
SB_56254| Best HMM Match : Arf (HMM E-Value=5.3e-31) 31 0.53
SB_28410| Best HMM Match : zf-CCCH (HMM E-Value=7.9e-05) 31 0.93
SB_47269| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_54084| Best HMM Match : zf-CCCH (HMM E-Value=0.00066) 30 1.6
SB_21056| Best HMM Match : zf-CCCH (HMM E-Value=0.0047) 30 1.6
SB_49233| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_53037| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_54812| Best HMM Match : 7tm_1 (HMM E-Value=0) 29 2.9
SB_20270| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.1e-35) 29 2.9
SB_38162| Best HMM Match : zf-CCCH (HMM E-Value=0.018) 29 2.9
SB_44697| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_41898| Best HMM Match : EGF_CA (HMM E-Value=3.9e-14) 28 6.6
SB_38362| Best HMM Match : BRCT (HMM E-Value=0) 28 6.6
SB_48930| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=3) 27 8.7
SB_31115| Best HMM Match : zf-CCCH (HMM E-Value=0.039) 27 8.7
SB_12807| Best HMM Match : Extensin_2 (HMM E-Value=0.56) 27 8.7
>SB_45794| Best HMM Match : zf-CCCH (HMM E-Value=3.1e-27)
Length = 527
Score = 148 bits (358), Expect = 4e-36
Identities = 58/69 (84%), Positives = 63/69 (91%)
Frame = +2
Query: 185 YKTELCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCH 364
YKTELCRPFEE+G CKYGDKCQFAHG ELR L RHPKYKTELCRTFH++GFCPYGPRCH
Sbjct: 155 YKTELCRPFEESGTCKYGDKCQFAHGYHELRQLARHPKYKTELCRTFHTIGFCPYGPRCH 214
Query: 365 FVHNAEEAR 391
F+HNA+E R
Sbjct: 215 FIHNADEKR 223
Score = 47.6 bits (108), Expect = 8e-06
Identities = 19/40 (47%), Positives = 22/40 (55%)
Frame = +2
Query: 275 RNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVHNAEEARR 394
R Q +YKTELCR F G C YG +C F H E R+
Sbjct: 147 RGSQNSSRYKTELCRPFEESGTCKYGDKCQFAHGYHELRQ 186
>SB_34807| Best HMM Match : zf-CCCH (HMM E-Value=4.6e-07)
Length = 505
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = +2
Query: 188 KTELCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHP 295
K LCR F G C YGD+CQF H ++ N Q P
Sbjct: 14 KPTLCRYFSANGYCFYGDQCQFVH-AKQTSNDQARP 48
Score = 34.7 bits (76), Expect = 0.057
Identities = 29/95 (30%), Positives = 36/95 (37%), Gaps = 2/95 (2%)
Frame = +2
Query: 302 KTELCRTFHSVGFCPYGPRCHFVHNAEEARRREXXXXXXXXXXXXXXXXXXXXXXXXXRS 481
K LCR F + G+C YG +C FVH + + + S
Sbjct: 14 KPTLCRYFSANGYCFYGDQCQFVHAKQTSNDQARPAPGGPVSPL--------------HS 59
Query: 482 PRSPHSPLTPYSSPAMSPPAQATAFAF--RRTNSP 580
P+ PH A PPAQA AF F TN P
Sbjct: 60 PK-PHMANKSKMPVAQPPPAQAQAFEFLPSATNQP 93
>SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09)
Length = 321
Score = 36.3 bits (80), Expect = 0.019
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 185 YKTELCRPFEEAGVCKYGDKCQFAH 259
Y+ ++C+ ++E G C +GD C+F H
Sbjct: 179 YQPDICKDYKETGFCGFGDSCKFLH 203
Score = 33.9 bits (74), Expect = 0.10
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +2
Query: 299 YKTELCRTFHSVGFCPYGPRCHFVHNAEE 385
Y+ ++C+ + GFC +G C F+H+ +
Sbjct: 179 YQPDICKDYKETGFCGFGDSCKFLHDRSD 207
>SB_282| Best HMM Match : zf-CCCH (HMM E-Value=2.4e-10)
Length = 508
Score = 31.9 bits (69), Expect = 0.40
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +2
Query: 188 KTELCRPFEEAGVCKYGDKCQFAH 259
+ ++CR + + G C++G+KC+F H
Sbjct: 39 RQKVCRFYAKKGNCRFGEKCRFVH 62
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 302 KTELCRTFHSVGFCPYGPRCHFVH 373
+ ++CR + G C +G +C FVH
Sbjct: 39 RQKVCRFYAKKGNCRFGEKCRFVH 62
>SB_56254| Best HMM Match : Arf (HMM E-Value=5.3e-31)
Length = 650
Score = 31.5 bits (68), Expect = 0.53
Identities = 17/59 (28%), Positives = 24/59 (40%)
Frame = +2
Query: 191 TELCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHF 367
++LC C GD C + H ++ + P E C F G CPYG C +
Sbjct: 64 SKLCSFAARGEECTRGDSCFYGHDPQKFLET-KEPDIGKE-CVNFLKSGKCPYGISCRY 120
>SB_28410| Best HMM Match : zf-CCCH (HMM E-Value=7.9e-05)
Length = 905
Score = 30.7 bits (66), Expect = 0.93
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 200 CRPFEEAGVCKYGDKCQFAHG 262
CR +EE G C G+ C F HG
Sbjct: 255 CRDYEEKGFCIRGELCPFDHG 275
>SB_47269| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 720
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 197 LCRPFEEAGVCKYGDKCQFAHGVRELRNLQ 286
+C+ F + G CK+GD C+ H +E NL+
Sbjct: 187 VCQHFVD-GKCKFGDTCKRVHHFKEQHNLE 215
>SB_54084| Best HMM Match : zf-CCCH (HMM E-Value=0.00066)
Length = 731
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 224 VCKYGDKCQFAHGVREL 274
VC++G+ C FAHG EL
Sbjct: 650 VCRFGNTCSFAHGQEEL 666
>SB_21056| Best HMM Match : zf-CCCH (HMM E-Value=0.0047)
Length = 294
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 224 VCKYGDKCQFAHGVREL 274
VC++G+ C FAHG EL
Sbjct: 50 VCRFGNTCSFAHGQEEL 66
>SB_49233| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 309
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +2
Query: 188 KTELCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHF 367
+ +CR ++ GVC G KC+F H LQ P +CR + + G C C +
Sbjct: 34 ENNICRDYQR-GVCNRGGKCKFRHPEGMGIELQSPPM----ICRDYQN-GKCNRS-TCKY 86
Query: 368 VH 373
+H
Sbjct: 87 MH 88
>SB_53037| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 499
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 188 KTELCRPFEEAGVCKYGDKCQFAH 259
K +C F++ G C++G+KC+F H
Sbjct: 107 KKRVCWKFQK-GKCRFGEKCKFVH 129
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 296 KYKTELCRTFHSVGFCPYGPRCHFVHN 376
K K +C F G C +G +C FVHN
Sbjct: 105 KGKKRVCWKFQK-GKCRFGEKCKFVHN 130
>SB_54812| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 392
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 391 TQRTIVARRFIGIALIGRIYGVVYERRVAIATLAAFSIDALL 516
T I R+I + R+YG ++AI+ + AFS A+L
Sbjct: 88 TLTAIALNRYIAVMKAMRVYGAKKRAKLAISLIWAFSFSAVL 129
>SB_20270| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.1e-35)
Length = 724
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +3
Query: 144 PPVNRLLRHQPQVATRP--SSADRLKKRGFVNMGIN 245
PP RLL H P+++ RP S+ L+K G +N N
Sbjct: 454 PPFERLLEHLPRLSPRPYSISSSPLEKPGQLNFVFN 489
>SB_38162| Best HMM Match : zf-CCCH (HMM E-Value=0.018)
Length = 541
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +2
Query: 290 HPKYKTELCRTFHSVGFCPYGPRCHFVH 373
HP + CRTF + CPYG C FVH
Sbjct: 444 HPTFP---CRTFPN---CPYGKSCMFVH 465
>SB_44697| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = +2
Query: 200 CRPFEEA-GVCKYGDKCQFAHGVRELRNLQRHPK-YKTELC-RTFHSVGFC 343
C ++E G+C GD C + H V + H + YKT C S G+C
Sbjct: 91 CTQYDETTGICPSGDDCPYLHRVAGDVERRYHLRYYKTATCVYETDSRGYC 141
>SB_41898| Best HMM Match : EGF_CA (HMM E-Value=3.9e-14)
Length = 1087
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 188 KTELCRPFEEAGVCKYGDKC 247
KT++ R F VC YGDKC
Sbjct: 541 KTKMWRQFTVQVVCTYGDKC 560
>SB_38362| Best HMM Match : BRCT (HMM E-Value=0)
Length = 1572
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Frame = -1
Query: 353 VHKDRSQPNGK-CDTAPS---CI*DD--AEDCVVRGRREQIGIYPHIYKPPLLQTV 204
+H+ R+ N K C TA S I C G R + G+YPH Y P + +V
Sbjct: 944 IHQGRANDNSKECTTARSHGMFIVSPYWLHTCAEEGVRVEEGLYPHTYNPKMSLSV 999
>SB_48930| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=3)
Length = 255
Score = 27.5 bits (58), Expect = 8.7
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 352 TALPFR-A*RRGSKTQRTIVARRFIGIALIGRIYGVVYERRVAIATLAAFSIDALLFTCD 528
+AL +R + RG T IV FI I +I + VY RR A+ SID L+ D
Sbjct: 119 SALAYRKSSSRGVNTVTIIVPTIFIVIIIIVLVLFFVYRRRDPSASNVDISIDNPLYDVD 178
>SB_31115| Best HMM Match : zf-CCCH (HMM E-Value=0.039)
Length = 485
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 332 VGFCPYGPRCHFVHNAEEARRR 397
+G C +GPRC F H + +R
Sbjct: 198 LGRCTFGPRCRFYHPDRDPTKR 219
>SB_12807| Best HMM Match : Extensin_2 (HMM E-Value=0.56)
Length = 430
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 476 RSPRSPHSPLTPYSSPAMSPPAQATAFAFRRTNSPDP 586
+ P+ P SP+ P + +P A A N PDP
Sbjct: 3 QQPKWPVSPVNPAPAATTAPATNAAPAAANPPNPPDP 39
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,918,534
Number of Sequences: 59808
Number of extensions: 360582
Number of successful extensions: 1306
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1298
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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